RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 USP27XA6NNY8 438 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 C15orf62A8K5M9 175 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 CEACAM18A8MTB9 384 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 IDSB3KWA1 339 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 G3V2T6 193 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 H3BMQ9 156 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 MANBAO00462 879 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 MRPS12O15235 138 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 UGT2B11O75310 529 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 SDC1P18827 310 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 COX5AP20674 150 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 AK4P27144 223 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 CEACAM8P31997 349 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 RPA3P35244 121 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 RPL35P42766 123 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 TFPI2P48307 235 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 BACE1P56817 501 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 KLF3P57682 345 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 PFN3P60673 137 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 RPS20P60866 119 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 CKS1BP61024 79 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 RPL27P61353 136 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 ARG2P78540 354 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 PSG4Q00888 419 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 SP4Q02446 784 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 CD47Q08722 323 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 TCP10Q12799 353 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 RSU1Q15404 277 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 KCNJ8Q15842 424 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 SLC25A35Q3KQZ1 300 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 RNF212Q495C1 297 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 DNLZQ5SXM8 178 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 FAM27D1Q5T7N8 215 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 OR52E8Q6IFG1 317 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 WDR82Q6UXN9 313 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 SLC16A13Q7RTY0 426 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 IFT20Q8IY31 132 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 SPICQ8N5J4 248 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 ATPAF2Q8N5M1 289 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 WDSUB1Q8N9V3 476 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 AQP11Q8NBQ7 271 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 KLHDC9Q8NEP7 349 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 OR52B6Q8NGF0 335 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 OR4P4Q8NGL7 312 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 OR6T1Q8NGN1 323 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 OR4S2Q8NH73 311 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 C11orf45Q8TAV5 145 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 ZNF502Q8TBZ5 544 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 TBCKQ8TEA7 893 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 TADA1Q96BN2 335 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 SEH1LQ96EE3 360 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 SCGB3A2Q96PL1 93 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 NEDD4LQ96PU5 975 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 RASL11BQ9BPW5 248 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 PDCD1LG2Q9BQ51 273 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 CCDC32Q9BV29 185 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 CHST5Q9GZS9 411 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 OR51I1Q9H343 314 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 PPDPFQ9H3Y8 114 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 PRORYQ9H606 182 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 REEP4Q9H6H4 257 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 EBF2Q9HAK2 575 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 HMG20AQ9NP66 347 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 SDR39U1Q9NRG7 319 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 SLC7A7Q9UM01 511 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 ASF1AQ9Y294 204 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 KLF12Q9Y4X4 402 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 A2MP01023 1474 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 RB1CC1Q8TDY2 1594 aa3.97□□□□□ -1.77
CCDC88A-210ENST00000468534 SMG6Q86US8 1419 aaKnown RBP3.96□□□□□ -1.77
CCDC88A-210ENST00000468534 A0A0A6YYD4 124 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 A0A0G2JNG1 304 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 ISPDA4D126 451 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 CCDC160A6NGH7 325 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 F5H5K5 113 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 TRAPPC2LH3BP13 241 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 CCL21O00585 134 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 MFNGO00587 321 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 EI24O14681 340 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 RGS5O15539 181 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 CHST10O43529 356 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 ORC5O43913 435 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 GALR3O60755 368 aaPredicted RBP3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 FOXH1O75593 365 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 OR7C1O76099 320 aaPredicted RBP3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 ATG12O94817 140 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 OAS1P00973 400 aaKnown RBP3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 IGF2P01344 180 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 ATP1B1P05026 303 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 CRYGDP07320 174 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 OR56A5P0C7T3 313 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 LINC00271P0C7V0 271 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 METTL15P1P0C7V9 234 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 FAM157CP0CG43 387 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 OR13C7P0DN81 318 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 SPI1P17947 270 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 EIF2B2P49770 351 aaKnown RBP3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 TAF6P49848 677 aa3.96□□□□□ -1.78
CCDC88A-210ENST00000468534 AKR1D1P51857 326 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms