RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ANP32AP39687 249 aaKnown RBP3.54□□□□□ -1.84
HMGB1-207ENST00000468384 NKX2-1P43699 371 aaPredicted RBP3.54□□□□□ -1.84
HMGB1-207ENST00000468384 GPX6P59796 221 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 SARNPP82979 210 aaKnown RBP3.54□□□□□ -1.84
HMGB1-207ENST00000468384 PRPSAP1Q14558 356 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 KCNJ8Q15842 424 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 SSX2Q16385 188 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 MAPK14Q16539 360 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 UGT3A2Q3SY77 523 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 RNF212Q495C1 297 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 KCTD21Q4G0X4 260 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 PHLDA2Q53GA4 152 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 C11orf63Q6NUN7 778 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 NIPAL3Q6P499 406 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 ARL9Q6T311 187 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 CBLN3Q6UW01 205 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 WDR88Q6ZMY6 472 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 ZNF497Q6ZNH5 498 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 Q6ZR03 302 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 ODF3L1Q8IXM7 274 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 AGR3Q8TD06 166 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 HAVCR1Q96D42 359 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 GIMAP5Q96F15 307 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 SLC25A33Q9BSK2 321 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 NDUFAF3Q9BU61 184 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 OR2J1Q9GZK6 312 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 OR51B5Q9H339 312 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 RIBC2Q9H4K1 309 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 TCF7L2Q9NQB0 619 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 FBXO5Q9UKT4 447 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 OR2W1Q9Y3N9 320 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 KMT2DO14686 5537 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 A0A0A6YYD5 115 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 TRAV10A0A0B4J240 114 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 IGHV3-64DA0A0J9YX35 117 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 ZCWPW2A0A1B0GU75 182 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 CFAP73A6NFT4 308 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 TMCO5BA8MYB1 307 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 I3L521 148 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 SERPINI2O75830 405 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 GAGE7O76087 117 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 KDM4BO94953 1096 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 SERPING1P05155 500 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 H1F0P07305 194 aaKnown RBP3.53□□□□□ -1.84
HMGB1-207ENST00000468384 PATE4P0C8F1 98 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 FAM106CPP0CH98 169 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 GAGE12FP0CL80 117 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 GAGE12GP0CL81 117 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 GAGE12IP0CL82 117 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 IRF2P14316 349 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 AREGP15514 252 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 FUT1P19526 365 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 CSNK2A2P19784 350 aaPredicted RBP3.53□□□□□ -1.84
HMGB1-207ENST00000468384 IVDP26440 423 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 RFX2P48378 723 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 TAS2R39P59534 338 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 UBE2HP62256 183 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 GNB1P62873 340 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 CX3CL1P78423 397 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 RUNX1Q01196 453 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 ILF2Q12905 390 aaKnown RBP3.53□□□□□ -1.84
HMGB1-207ENST00000468384 IL24Q13007 206 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 GAGE1Q13065 139 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 GAGE4Q13068 117 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 HADHQ16836 314 aaKnown RBP3.53□□□□□ -1.84
HMGB1-207ENST00000468384 KCTD19Q17RG1 926 aaPredicted RBP3.53□□□□□ -1.84
HMGB1-207ENST00000468384 ZNF678Q5SXM1 525 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 SIGLEC15Q6ZMC9 328 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 ANKRD46Q86W74 232 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 SLC30A8Q8IWU4 369 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 MMD2Q8IY49 270 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 CPNE9Q8IYJ1 553 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 RNF113BQ8IZP6 322 aaKnown RBP3.53□□□□□ -1.84
HMGB1-207ENST00000468384 BATF2Q8N1L9 274 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 L3MBTL4Q8NA19 623 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 MLKLQ8NB16 471 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 OR11H4Q8NGC9 324 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 OR5D13Q8NGL4 314 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 SLC25A40Q8TBP6 338 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 LRRC45Q96CN5 670 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 GSN-AS1Q9NRJ2 163 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 SMPD3Q9NY59 655 aaPredicted RBP3.53□□□□□ -1.84
HMGB1-207ENST00000468384 DAPK2Q9UIK4 370 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 SNX6Q9UNH7 406 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 DHRS7Q9Y394 339 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 HDGFL3Q9Y3E1 203 aa3.53□□□□□ -1.84
HMGB1-207ENST00000468384 LOC102724200A0A096LPH7 203 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-207ENST00000468384 A0A1B0GWJ7 208 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 XKRY2A2RUG3 117 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 WDR91A4D1P6 747 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 C15orf62A8K5M9 175 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 E9PI62 339 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 F8VVB4 439 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 F8VWA3 439 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 NDUFA2O43678 99 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 SCGB2A1O75556 95 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 RHBDL1O75783 438 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 UBL3O95164 117 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 CD7P09564 240 aa3.52□□□□□ -1.85
HMGB1-207ENST00000468384 KDELR1P24390 212 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms