RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TIRAPP58753 221 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 BPIFB3P59826 476 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.02□□□□□ -1.45
USP54-208ENST00000461520 BAMBIQ13145 260 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 KCNJ8Q15842 424 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 PGBD2Q6P3X8 592 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 TMEM65Q6PI78 240 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 DCDC5Q6ZRR9 648 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 MRPL21Q7Z2W9 205 aaKnown RBP6.02□□□□□ -1.45
USP54-208ENST00000461520 CPLX4Q7Z7G2 160 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 NAA40Q86UY6 237 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 ZDHHC21Q8IVQ6 265 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 NRACQ8N912 160 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 OR52L1Q8NGH7 329 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 OR4C15Q8NGM1 316 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 OR11L1Q8NGX0 322 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 OR2T4Q8NH00 348 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 SPRYD4Q8WW59 207 aaPredicted RBP6.02□□□□□ -1.45
USP54-208ENST00000461520 SLCO4A1Q96BD0 722 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 ZNF799Q96GE5 643 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 C1orf147Q96MC9 270 aaPredicted RBP6.02□□□□□ -1.45
USP54-208ENST00000461520 CDRT15Q96T59 188 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 TRIM15Q9C019 465 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 FN3KQ9H479 309 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 MRPL22Q9NWU5 206 aaKnown RBP6.02□□□□□ -1.45
USP54-208ENST00000461520 NDE1Q9NXR1 346 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 IL20Q9NYY1 176 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 MGAT4CQ9UBM8 478 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 CLN8Q9UBY8 286 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 CDH10Q9Y6N8 788 aa6.02□□□□□ -1.45
USP54-208ENST00000461520 TRAV40A0A0B4J280 105 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 IGHV3-64DA0A0J9YX35 117 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 CD300LBA8K4G0 201 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 TNFRSF11BO00300 401 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 BHLHE40O14503 412 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 RRP9O43818 475 aaKnown RBP6.01□□□□□ -1.45
USP54-208ENST00000461520 GMDSO60547 372 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 PTBP3O95758 552 aaKnown RBP6.01□□□□□ -1.45
USP54-208ENST00000461520 LIPFP07098 398 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 IGHV4-38-2P0DP08 117 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 CA6P23280 308 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 PSMB10P40306 273 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 SLC9A3R2Q15599 337 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 OR8G1Q15617 311 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 CLEC12AQ5QGZ9 265 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 FAM201AQ5SY85 155 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 WDR25Q64LD2 544 aaPredicted RBP6.01□□□□□ -1.45
USP54-208ENST00000461520 DRAM2Q6UX65 266 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 C16orf89Q6UX73 402 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 ZNF841Q6ZN19 808 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 RASSF6Q6ZTQ3 369 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 SPERTQ8NA61 448 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 PROKR2Q8NFJ6 384 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 OR10S1Q8NGN2 331 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 OSR1Q8TAX0 266 aaPredicted RBP6.01□□□□□ -1.45
USP54-208ENST00000461520 DUX5Q96PT3 197 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 DDOQ99489 341 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 NUDT16L1Q9BRJ7 211 aaKnown RBP6.01□□□□□ -1.45
USP54-208ENST00000461520 BTBD10Q9BSF8 475 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 FAM107BQ9H098 131 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 OPA3Q9H6K4 179 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 EGLN3Q9H6Z9 239 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 ZNF696Q9H7X3 374 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 FN3KRPQ9HA64 309 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 TRIM36Q9NQ86 728 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 MRPL15Q9P015 296 aaKnown RBP6.01□□□□□ -1.45
USP54-208ENST00000461520 TAGLN3Q9UI15 199 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 PCDHGB1Q9Y5G3 927 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 LYVE1Q9Y5Y7 322 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 WNK2Q9Y3S1 2297 aa6.01□□□□□ -1.45
USP54-208ENST00000461520 GGT3PA6NGU5 568 aa6□□□□□ -1.45
USP54-208ENST00000461520 TVP23AA6NH52 213 aa6□□□□□ -1.45
USP54-208ENST00000461520 NDUFA2O43678 99 aa6□□□□□ -1.45
USP54-208ENST00000461520 ENSAO43768 121 aaKnown RBP6□□□□□ -1.45
USP54-208ENST00000461520 DCTN3O75935 186 aa6□□□□□ -1.45
USP54-208ENST00000461520 CCNB2O95067 398 aa6□□□□□ -1.45
USP54-208ENST00000461520 FMO3P31513 532 aa6□□□□□ -1.45
USP54-208ENST00000461520 PYCR1P32322 319 aa6□□□□□ -1.45
USP54-208ENST00000461520 DDOSTP39656 456 aa6□□□□□ -1.45
USP54-208ENST00000461520 RPS27P42677 84 aaKnown RBP6□□□□□ -1.45
USP54-208ENST00000461520 MAGEA2P43356 314 aa6□□□□□ -1.45
USP54-208ENST00000461520 ENTPD1P49961 510 aa6□□□□□ -1.45
USP54-208ENST00000461520 MNAT1P51948 309 aa6□□□□□ -1.45
USP54-208ENST00000461520 BLVRAP53004 296 aa6□□□□□ -1.45
USP54-208ENST00000461520 ZNF92Q03936 586 aa6□□□□□ -1.45
USP54-208ENST00000461520 MZT1Q08AG7 82 aa6□□□□□ -1.45
USP54-208ENST00000461520 MPPED2Q15777 294 aa6□□□□□ -1.45
USP54-208ENST00000461520 PCK2Q16822 640 aa6□□□□□ -1.45
USP54-208ENST00000461520 SNAI3Q3KNW1 292 aa6□□□□□ -1.45
USP54-208ENST00000461520 TEX30Q5JUR7 227 aa6□□□□□ -1.45
USP54-208ENST00000461520 PRAMEF6Q5VXH4 476 aa6□□□□□ -1.45
USP54-208ENST00000461520 ZNF770Q6IQ21 691 aaPredicted RBP6□□□□□ -1.45
USP54-208ENST00000461520 C16orf87Q6PH81 154 aa6□□□□□ -1.45
USP54-208ENST00000461520 LYPD2Q6UXB3 125 aa6□□□□□ -1.45
USP54-208ENST00000461520 DCXRQ7Z4W1 244 aa6□□□□□ -1.45
USP54-208ENST00000461520 DEFB107AQ8IZN7 70 aa6□□□□□ -1.45
USP54-208ENST00000461520 CYB561A3Q8NBI2 242 aa6□□□□□ -1.45
USP54-208ENST00000461520 SLC37A3Q8NCC5 494 aa6□□□□□ -1.45
USP54-208ENST00000461520 OR9Q2Q8NGE9 314 aa6□□□□□ -1.45
USP54-208ENST00000461520 ZNRF4Q8WWF5 429 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms