RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 TNFRSF13CQ96RJ3 184 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 UBL7Q96S82 380 aaPredicted RBP11.99□□□□□ -0.49
USP40-208ENST00000450966 NMNAT3Q96T66 252 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 R3HDMLQ9H3Y0 253 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 PLEK2Q9NYT0 353 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 IFITM10A6NMD0 228 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 HIST1H1CP16403 213 aaKnown RBP11.99□□□□□ -0.49
USP40-208ENST00000450966 ATF1P18846 271 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 CEBPDP49716 269 aaPredicted RBP11.99□□□□□ -0.49
USP40-208ENST00000450966 MVDP53602 400 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 PPP1R1AQ13522 171 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 RAB32Q13637 225 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 GDF7Q7Z4P5 450 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 ACOT4Q8N9L9 421 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 RLN3Q8WXF3 142 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 SLC35E1Q96K37 410 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 DCBLD2Q96PD2 775 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 FAM206AQ9NX38 181 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 LIPGQ9Y5X9 500 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 OR5AL1P0C617 328 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 COX20Q5RI15 118 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 DRAM2Q6UX65 266 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 TMEM183AQ8IXX5 376 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 TWSG1Q9GZX9 223 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 C5AR2Q9P296 337 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 SLC5A10A0PJK1 596 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 ZNF17P17021 662 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 COMPP49747 757 aaPredicted RBP11.99□□□□□ -0.49
USP40-208ENST00000450966 OLIG1Q8TAK6 271 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 TRMT61AQ96FX7 289 aaKnown RBP11.99□□□□□ -0.49
USP40-208ENST00000450966 XRCC2O43543 280 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 GALR3O60755 368 aaPredicted RBP11.98□□□□□ -0.49
USP40-208ENST00000450966 PCBD1P61457 104 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 ARL16Q0P5N6 197 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 PLPPR5Q32ZL2 321 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 PARM1Q6UWI2 310 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 CGGBP1Q9UFW8 167 aaPredicted RBP11.98□□□□□ -0.49
USP40-208ENST00000450966 ZNF835Q9Y2P0 537 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 STARD10Q9Y365 291 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 KDM4EB2RXH2 506 aaPredicted RBP11.98□□□□□ -0.49
USP40-208ENST00000450966 PDE6DO43924 150 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 SEC11BP0C7V7 166 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 BRS3P32247 399 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 NEIL2Q969S2 332 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 DERL3Q96Q80 235 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 FKRPQ9H9S5 495 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 DYNLRB1Q9NP97 96 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 ZNF737O75373 536 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 CRISPLD2Q9H0B8 497 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 OR2D2Q9H210 308 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 HELTA6NFD8 242 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 SELENOFO60613 162 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 FCGR2AP12318 317 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 HSPB9Q9BQS6 159 aa11.98□□□□□ -0.49
USP40-208ENST00000450966 CDC14CA4D256 554 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 FBLL1A6NHQ2 334 aaKnown RBP11.97□□□□□ -0.49
USP40-208ENST00000450966 IL1F10Q8WWZ1 152 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 NEIL1Q96FI4 390 aaPredicted RBP11.97□□□□□ -0.49
USP40-208ENST00000450966 ZFP64Q9NPA5 681 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 VAX2Q9UIW0 290 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 PCOLCE2Q9UKZ9 415 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 KLRC4-KLRK1H3BQV0 150 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 FURINP09958 794 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 ADRA1AP35348 466 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 SLC6A12P48065 614 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 TMEM33P57088 247 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 PNLIPRP3Q17RR3 467 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 KMT5CQ86Y97 462 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 ORAI1Q96D31 301 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 COA4Q9NYJ1 87 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 SERPINE3A8MV23 424 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 DBHP09172 617 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 CTXN2P0C2S0 81 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 MMP16P51512 607 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 EIF3IQ13347 325 aaKnown RBP11.97□□□□□ -0.49
USP40-208ENST00000450966 MKXQ8IYA7 352 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 CNEP1R1Q8N9A8 125 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 ARRDC3Q96B67 414 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 MUCL1Q96DR8 90 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 PLA2G12AQ9BZM1 189 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 OR2J1Q9GZK6 312 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 CTSSP25774 331 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 MRPL58Q14197 206 aaKnown RBP11.97□□□□□ -0.49
USP40-208ENST00000450966 WBP2NLQ6ICG8 309 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 SLC35E3Q7Z769 313 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 GPR32P1Q8NGA4 272 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 LPAR5Q9H1C0 372 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 MANBALQ9NQG1 85 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 SLC2A8Q9NY64 477 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 TOX3O15405 576 aaPredicted RBP11.97□□□□□ -0.49
USP40-208ENST00000450966 SOD3P08294 240 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 KLF9Q13886 244 aaPredicted RBP11.97□□□□□ -0.49
USP40-208ENST00000450966 CYHR1Q6ZMK1 362 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 OR2A1Q8NGT9 310 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 TMEM255BQ8WV15 326 aa11.97□□□□□ -0.49
USP40-208ENST00000450966 MYO10Q9HD67 2058 aa11.96□□□□□ -0.49
USP40-208ENST00000450966 ICOSLGO75144 302 aa11.96□□□□□ -0.49
USP40-208ENST00000450966 SRP14P37108 136 aaKnown RBP11.96□□□□□ -0.49
USP40-208ENST00000450966 OR4S1Q8NGB4 309 aa11.96□□□□□ -0.49
USP40-208ENST00000450966 RTN4IP1Q8WWV3 396 aaPredicted RBP11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms