RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 ALKBH1Q13686 389 aaKnown RBP15.62■□□□□ 0.09
SHH-204ENST00000441114 CHRFAM7AQ494W8 412 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 FAM120AOSQ5T036 256 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 TMEM244Q5VVB8 128 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 FAHD2BQ6P2I3 314 aaPredicted RBP15.62■□□□□ 0.09
SHH-204ENST00000441114 WDR82Q6UXN9 313 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 SYS1Q8N2H4 156 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 BPIFB6Q8NFQ5 453 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 OR5A2Q8NGI9 324 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 GGHQ92820 318 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 FAHD2AQ96GK7 314 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 C2CD3Q4AC94 2353 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 TRAV20A0A0B4J274 112 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 OOEPA6NGQ2 149 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 E9PI62 339 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 XPNPEP2O43895 674 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 ATP6V1G2O95670 118 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 WNT2P09544 360 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 ZFP36P26651 326 aaKnown RBP15.61■□□□□ 0.09
SHH-204ENST00000441114 DCKP27707 260 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 GBX2P52951 348 aaPredicted RBP15.61■□□□□ 0.09
SHH-204ENST00000441114 ESCO2Q56NI9 601 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 LAIR2Q6ISS4 152 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 FDX2Q6P4F2 183 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 KRT74Q7RTS7 529 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 ZNF676Q8N7Q3 588 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 NPRL2Q8WTW4 380 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 TMEM80Q96HE8 168 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 VCX3BQ9H321 246 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 TMEM160Q9NX00 188 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 MIOXQ9UGB7 285 aa15.61■□□□□ 0.09
SHH-204ENST00000441114 TRAV38-1A0A0B4J264 116 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 OR5B21A6NL26 309 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 F5H0A9 414 aaPredicted RBP15.6■□□□□ 0.09
SHH-204ENST00000441114 PHF1O43189 567 aaPredicted RBP15.6■□□□□ 0.09
SHH-204ENST00000441114 FOXH1O75593 365 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 LHBP01229 141 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 GYPAP02724 150 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 MYL12AP19105 171 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 CCR9P51686 369 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 OR2G6Q5TZ20 316 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 TMEM42Q69YG0 159 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 DCDC5Q6ZRR9 648 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 Q6ZSR3 168 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 OR8B3Q8NGG8 313 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 TRMT10AQ8TBZ6 339 aaKnown RBP15.6■□□□□ 0.09
SHH-204ENST00000441114 SEH1LQ96EE3 360 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 NEIL1Q96FI4 390 aaPredicted RBP15.6■□□□□ 0.09
SHH-204ENST00000441114 POM121Q96HA1 1249 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 OR8B2Q96RD0 313 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 TLNRD1Q9H1K6 362 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 OR51I2Q9H344 312 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 CHCHD3Q9NX63 227 aaKnown RBP15.6■□□□□ 0.09
SHH-204ENST00000441114 ERVK-18Q9QC07 812 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 CLEC2DQ9UHP7 191 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 CDC42EP3Q9UKI2 254 aa15.6■□□□□ 0.09
SHH-204ENST00000441114 DIMT1Q9UNQ2 313 aaKnown RBP15.6■□□□□ 0.09
SHH-204ENST00000441114 EXOSC1Q9Y3B2 195 aaKnown RBP15.6■□□□□ 0.09
SHH-204ENST00000441114 NSD1Q96L73 2696 aaPredicted RBP15.59■□□□□ 0.09
SHH-204ENST00000441114 FAM230AA0A1W2PPH8 454 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 ANKRD61A6NGH8 418 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 OR4C45A6NMZ5 311 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 DHRS7CA6NNS2 312 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 H0YJX3 145 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 AKR7A2O43488 359 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 RHBDL1O75783 438 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 ZNF12P17014 697 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 HNF1AP20823 631 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 PCMT1P22061 227 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 GTF2A1P52655 376 aaPredicted RBP15.59■□□□□ 0.09
SHH-204ENST00000441114 GNB2P62879 340 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 ST3GAL4Q11206 333 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 KCNJ8Q15842 424 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 FAM76BQ5HYJ3 339 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 DCAF12L2Q5VW00 463 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 HAGHLQ6PII5 290 aaPredicted RBP15.59■□□□□ 0.09
SHH-204ENST00000441114 IZUMO2Q6UXV1 221 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 TMPRSS11AQ6ZMR5 421 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 AHSA2Q719I0 299 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 NLRC3Q7RTR2 1065 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 CCDC54Q8NEL0 328 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 OR10AC1Q8NH08 325 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 FGGYQ96C11 551 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 SSBP3Q9BWW4 388 aaPredicted RBP15.59■□□□□ 0.09
SHH-204ENST00000441114 JAM3Q9BX67 310 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 SNTG1Q9NSN8 517 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 LPAR3Q9UBY5 353 aa15.59■□□□□ 0.09
SHH-204ENST00000441114 CAB39Q9Y376 341 aaPredicted RBP15.59■□□□□ 0.09
SHH-204ENST00000441114 SONP18583 2426 aaKnown RBP15.58■□□□□ 0.09
SHH-204ENST00000441114 DOCK11Q5JSL3 2073 aa15.58■□□□□ 0.09
SHH-204ENST00000441114 EFCAB10A6NFE3 127 aa15.58■□□□□ 0.08
SHH-204ENST00000441114 ADAM20O43506 726 aa15.58■□□□□ 0.08
SHH-204ENST00000441114 FSTL3O95633 263 aa15.58■□□□□ 0.08
SHH-204ENST00000441114 ISG15P05161 165 aa15.58■□□□□ 0.08
SHH-204ENST00000441114 ZNF20P17024 532 aa15.58■□□□□ 0.08
SHH-204ENST00000441114 PITPNBP48739 271 aa15.58■□□□□ 0.08
SHH-204ENST00000441114 MRPL28Q13084 256 aaKnown RBP15.58■□□□□ 0.08
SHH-204ENST00000441114 MED21Q13503 144 aa15.58■□□□□ 0.08
SHH-204ENST00000441114 UBE2V2Q15819 145 aa15.58■□□□□ 0.08
SHH-204ENST00000441114 FAM90A1Q86YD7 464 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms