RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 NEUROG2Q9H2A3 272 aa1.44□□□□□ -2.18
PTPRC-208ENST00000427110 TMEM38AQ9H6F2 299 aa1.44□□□□□ -2.18
PTPRC-208ENST00000427110 EXO5Q9H790 373 aa1.44□□□□□ -2.18
PTPRC-208ENST00000427110 PSTPIP2Q9H939 334 aa1.44□□□□□ -2.18
PTPRC-208ENST00000427110 MRM3Q9HC36 420 aaKnown RBP1.44□□□□□ -2.18
PTPRC-208ENST00000427110 MYOZ1Q9NP98 299 aaPredicted RBP1.44□□□□□ -2.18
PTPRC-208ENST00000427110 DMAC2Q9NW81 257 aa1.44□□□□□ -2.18
PTPRC-208ENST00000427110 SLC39A1Q9NY26 324 aa1.44□□□□□ -2.18
PTPRC-208ENST00000427110 MTFP1Q9UDX5 166 aa1.44□□□□□ -2.18
PTPRC-208ENST00000427110 GUCA1BQ9UMX6 200 aa1.44□□□□□ -2.18
PTPRC-208ENST00000427110 SNX12Q9UMY4 172 aa1.44□□□□□ -2.18
PTPRC-208ENST00000427110 BZW2Q9Y6E2 419 aaKnown RBP1.44□□□□□ -2.18
PTPRC-208ENST00000427110 MCM3APO60318 1980 aa1.44□□□□□ -2.18
PTPRC-208ENST00000427110 RALGAPA2Q2PPJ7 1873 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 OTOFQ9HC10 1997 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 ZNF236Q9UL36 1845 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 COL4A5P29400 1685 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 A0A087X0T9 212 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 IGHV1OR15-9A0A0B4J2B8 117 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 KBTBD11-OT1A0A1B0GTJ5 212 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 GABRR3A8MPY1 467 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 GOLGA8KD6RF30 607 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 H3BQF6 201 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 H7C1H1 209 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 CASQ2O14958 399 aaPredicted RBP1.43□□□□□ -2.18
PTPRC-208ENST00000427110 CHST10O43529 356 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 CALUO43852 315 aaPredicted RBP1.43□□□□□ -2.18
PTPRC-208ENST00000427110 GCM2O75603 506 aaPredicted RBP1.43□□□□□ -2.18
PTPRC-208ENST00000427110 SLC22A5O76082 557 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 SEMA3DO95025 777 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 LYPLA2O95372 231 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 IL4P05112 153 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 IVLP07476 585 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 CCDC172P0C7W6 258 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 LINC00869P0C866 280 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 FAM228BP0C875 321 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 OR8G3PP0DMU2 310 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 GZMAP12544 262 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 UCHL3P15374 230 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 TALDO1P37837 337 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 HSPA9P38646 679 aaKnown RBP1.43□□□□□ -2.18
PTPRC-208ENST00000427110 RBM34P42696 430 aaKnown RBP1.43□□□□□ -2.18
PTPRC-208ENST00000427110 SLC1A2P43004 574 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 RAB9AP51151 201 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 CCNG1P51959 295 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 SYNJ2BPP57105 145 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 TAS2R46P59540 309 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 GTF2BQ00403 316 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 CDK5Q00535 292 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 LOXL1Q08397 574 aaPredicted RBP1.43□□□□□ -2.18
PTPRC-208ENST00000427110 ILKQ13418 452 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 IL18Q14116 193 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 RBMY1FQ15415 496 aaKnown RBP1.43□□□□□ -2.18
PTPRC-208ENST00000427110 EXOC3L4Q17RC7 722 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 HSDL1Q3SXM5 330 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 MPV17L2Q567V2 206 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 AVPI1Q5T686 147 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 AP1ARQ63HQ0 302 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 ADNP2Q6IQ32 1131 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 TMEM205Q6UW68 189 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 SHISA6Q6ZSJ9 500 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 ZNF720Q7Z2F6 126 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 IFT20Q8IY31 132 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 SYCE1Q8N0S2 351 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 DAW1Q8N136 415 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 ZNF561Q8N587 486 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 ZNF709Q8N972 641 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 OR6Q1Q8NGQ2 317 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 ERMNQ8TAM6 284 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 PTX4Q96A99 478 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 NEURL3Q96EH8 262 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 NARS2Q96I59 477 aaKnown RBP1.43□□□□□ -2.18
PTPRC-208ENST00000427110 ZNF488Q96MN9 340 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 ALS2CR12Q96Q35 445 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 RHOXF2Q9BQY4 288 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 TEKT3Q9BXF9 490 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 ZYG11BQ9C0D3 744 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 PIGUQ9H490 435 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 PARVGQ9HBI0 331 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 SLC38A10Q9HBR0 1119 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 FBXO6Q9NRD1 293 aaPredicted RBP1.43□□□□□ -2.18
PTPRC-208ENST00000427110 MRPL22Q9NWU5 206 aaKnown RBP1.43□□□□□ -2.18
PTPRC-208ENST00000427110 CLN8Q9UBY8 286 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 OPN4Q9UHM6 478 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 ENOPH1Q9UHY7 261 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 TFR2Q9UP52 801 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 COQ4Q9Y3A0 265 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 UBIAD1Q9Y5Z9 338 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 RFNGQ9Y644 331 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 SCN2AQ99250 2005 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 ZNF638Q14966 1978 aaKnown RBP1.43□□□□□ -2.18
PTPRC-208ENST00000427110 ARHGAP21Q5T5U3 1957 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 SHROOM3Q8TF72 1996 aa1.43□□□□□ -2.18
PTPRC-208ENST00000427110 SSC5DA1L4H1 1573 aa1.42□□□□□ -2.18
PTPRC-208ENST00000427110 SMIM26A0A096LP01 95 aa1.42□□□□□ -2.18
PTPRC-208ENST00000427110 SERTM2A0A1B0GWG4 89 aa1.42□□□□□ -2.18
PTPRC-208ENST00000427110 COLCA2A8K830 154 aa1.42□□□□□ -2.18
PTPRC-208ENST00000427110 SERPINE3A8MV23 424 aa1.42□□□□□ -2.18
PTPRC-208ENST00000427110 MIF4GDA9UHW6 222 aaKnown RBP1.42□□□□□ -2.18
PTPRC-208ENST00000427110 F8VZ95 297 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms