RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 FLOT2Q14254 428 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 LCN1P1Q5VSP4 162 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 KCTD18Q6PI47 426 aaPredicted RBP9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 DEGS2Q6QHC5 323 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 ZNF788Q6ZQV5 615 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 KRT74Q7RTS7 529 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 KRT77Q7Z794 578 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 TMEM179BQ7Z7N9 219 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 PDZD9Q8IXQ8 264 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 BBS1Q8NFJ9 593 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 ANGPTL6Q8NI99 470 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 H1FXQ92522 213 aaKnown RBP9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 PIGCQ92535 297 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 MED30Q96HR3 178 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 RNF170Q96K19 258 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 LYZL4Q96KX0 146 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 GAFA1Q96PS6 74 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 CITED1Q99966 193 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 YIPF3Q9GZM5 350 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 WDR13Q9H1Z4 485 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 SIRT7Q9NRC8 400 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 SNTG1Q9NSN8 517 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 ZNRD1Q9P1U0 126 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 NLKQ9UBE8 527 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 DNAJB9Q9UBS3 223 aa9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 SLC25A10Q9UBX3 287 aaPredicted RBP9.5□□□□□ -0.89
SQSTM1-203ENST00000422245 OR5B21A6NL26 309 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 M0R1W7 72 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 TIMM23O14925 209 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 NPFFO15130 113 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 AKR7A2O43488 359 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 FKBP6O75344 327 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 ATP6V1B1P15313 513 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 AMY2BP19961 511 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 DCTDP32321 178 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 MAP2K3P46734 347 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 GNG3P63215 75 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 CBX1P83916 185 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 DGUOKQ16854 277 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 ZNF829Q3KNS6 432 aaPredicted RBP9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 DNAL1Q4LDG9 190 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 NCR3LG1Q68D85 454 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 C1orf122Q6ZSJ8 110 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 COMMD2Q86X83 199 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 HS3ST5Q8IZT8 346 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 OR5T2Q8NGG2 359 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 ASB17Q8WXJ9 295 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 MROQ9BYG7 248 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 PRRG3Q9BZD7 231 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 FGF23Q9GZV9 251 aaPredicted RBP9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 METTL8Q9H825 291 aaKnown RBP9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 FAM206AQ9NX38 181 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 VPREB3Q9UKI3 123 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 RNF114Q9Y508 228 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 TMEM14AQ9Y6G1 99 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 WNK1Q9H4A3 2382 aa9.49□□□□□ -0.89
SQSTM1-203ENST00000422245 TRBV23-1A0A0A0MS06 115 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 TMEM269A0A1B0GVZ9 245 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 A0A1W2PQ09 198 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 OR2AT4A6NND4 320 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 RNASEK-C17orf49H0YIS7 233 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 ZNF254O75437 659 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 PAHP00439 452 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 ACAA1P09110 424 aaPredicted RBP9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 NDUFB7P17568 137 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 GLRA1P23415 457 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 GPM6AP51674 278 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 ROM1Q03395 351 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 SRSF4Q08170 494 aaKnown RBP9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 APOFQ13790 326 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 BLMHQ13867 455 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 SNAPC1Q16533 368 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 TAF9Q16594 264 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 CEACAM21Q3KPI0 293 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 ZBTB37Q5TC79 503 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 DHRS7BQ6IAN0 325 aaPredicted RBP9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 TRPM8Q7Z2W7 1104 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 THAP5Q7Z6K1 395 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 SPATA24Q86W54 205 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 Q8N7P7 452 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 OR5R1Q8NH85 324 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 LINC01006Q8NI28 216 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 TNFRSF14Q92956 283 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 MMP27Q9H306 513 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 OR51I2Q9H344 312 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 PAPOLBQ9NRJ5 636 aaKnown RBP9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 TVP23BQ9NYZ1 205 aa9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 NUFIP1Q9UHK0 495 aaKnown RBP9.48□□□□□ -0.89
SQSTM1-203ENST00000422245 IGKV1D-17A0A075B6S4 117 aa9.47□□□□□ -0.89
SQSTM1-203ENST00000422245 TCRBV3S1A0A5B6 114 aa9.47□□□□□ -0.89
SQSTM1-203ENST00000422245 CCDC182A6NF36 153 aa9.47□□□□□ -0.89
SQSTM1-203ENST00000422245 ZNF732B4DXR9 585 aa9.47□□□□□ -0.89
SQSTM1-203ENST00000422245 GYG2O15488 501 aa9.47□□□□□ -0.89
SQSTM1-203ENST00000422245 CLPXO76031 633 aa9.47□□□□□ -0.89
SQSTM1-203ENST00000422245 PRKACGP22612 351 aa9.47□□□□□ -0.89
SQSTM1-203ENST00000422245 SAA4P35542 130 aa9.47□□□□□ -0.89
SQSTM1-203ENST00000422245 UBE2E1P51965 193 aa9.47□□□□□ -0.89
SQSTM1-203ENST00000422245 RIDAP52758 137 aaKnown RBP9.47□□□□□ -0.89
SQSTM1-203ENST00000422245 PROK1P58294 105 aa9.47□□□□□ -0.89
SQSTM1-203ENST00000422245 ACSM1Q08AH1 577 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms