RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 CCDC159P0C7I6 412 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 EGR1P18146 543 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 C21orf33P30042 268 aaPredicted RBP10.48□□□□□ -0.73
SKA1-203ENST00000417656 TGM4P49221 684 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 GZMKP49863 264 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 GPM6AP51674 278 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 CDH15P55291 814 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 LMO4P61968 165 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 CDK5R1Q15078 307 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 CEACAM21Q3KPI0 293 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 EGFL6Q8IUX8 553 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 C11orf53Q8IXP5 236 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 C1orf87Q8N0U7 546 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 CCDC54Q8NEL0 328 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 OR51A4Q8NGJ6 313 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 GATAD2BQ8WXI9 593 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 RPL3LQ92901 407 aaKnown RBP10.48□□□□□ -0.73
SKA1-203ENST00000417656 ADAT3Q96EY9 351 aaPredicted RBP10.48□□□□□ -0.73
SKA1-203ENST00000417656 HIST1H2AAQ96QV6 131 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 PDCD1LG2Q9BQ51 273 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 TLNRD1Q9H1K6 362 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 METTL17Q9H7H0 456 aaPredicted RBP10.48□□□□□ -0.73
SKA1-203ENST00000417656 ZNF665Q9H7R5 613 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 SCN3BQ9NY72 215 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 RNF7Q9UBF6 113 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 HHLA2Q9UM44 414 aa10.48□□□□□ -0.73
SKA1-203ENST00000417656 PPIAL4EA0A075B759 164 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 TRBV2A0A0J9YWF9 115 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 OR5B21A6NL26 309 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 TMEM212A6NML5 194 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 ZNF732B4DXR9 585 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 FAM157AC9JC47 383 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 PTGES3LE9PB15 166 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 PPIAL4DF5H284 164 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 CDIPTO14735 213 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 CDK1P06493 297 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 PPIAL4FP0DN26 164 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 ZNF12P17014 697 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 MDH2P40926 338 aaKnown RBP10.47□□□□□ -0.73
SKA1-203ENST00000417656 GNG3P63215 75 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 DOC2BQ14184 412 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 TMEM155Q4W5P6 130 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 CYB5R2Q6BCY4 276 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 WDR82Q6UXN9 313 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 SPICQ8N5J4 248 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 GCSAMQ8N6F7 178 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 ZFP41Q8N8Y5 198 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 ZNF485Q8NCK3 441 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 OR13C3Q8NGS6 347 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 OR5AK2Q8NH90 309 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 TRMT10AQ8TBZ6 339 aaKnown RBP10.47□□□□□ -0.73
SKA1-203ENST00000417656 HAVCR2Q8TDQ0 301 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 NPRL2Q8WTW4 380 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 LRRC29Q8WV35 223 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 RGP1Q92546 391 aaPredicted RBP10.47□□□□□ -0.73
SKA1-203ENST00000417656 RAB39BQ96DA2 213 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 MSI2Q96DH6 328 aaKnown RBP10.47□□□□□ -0.73
SKA1-203ENST00000417656 CHST5Q9GZS9 411 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 COMMD4Q9H0A8 199 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 LPAR2Q9HBW0 351 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 TRIM36Q9NQ86 728 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 ERVK-18Q9QC07 812 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 PPIAL4AQ9Y536 164 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 SIRT4Q9Y6E7 314 aaPredicted RBP10.47□□□□□ -0.73
SKA1-203ENST00000417656 ABCA1O95477 2261 aa10.47□□□□□ -0.73
SKA1-203ENST00000417656 CSPG4Q6UVK1 2322 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 TLN2Q9Y4G6 2542 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 CEACAM18A8MTB9 384 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 GATBO75879 557 aaKnown RBP10.46□□□□□ -0.73
SKA1-203ENST00000417656 ZNF20P17024 532 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 SLC35A2P78381 396 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 ZNF404Q494X3 552 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 CCDC58Q4VC31 144 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 RPL22L1Q6P5R6 122 aaKnown RBP10.46□□□□□ -0.73
SKA1-203ENST00000417656 LRRC28Q86X40 367 aaPredicted RBP10.46□□□□□ -0.73
SKA1-203ENST00000417656 MUC20Q8N307 709 aaPredicted RBP10.46□□□□□ -0.73
SKA1-203ENST00000417656 SCCPDHQ8NBX0 429 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 DEFB108BQ8NET1 73 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 OR5A2Q8NGI9 324 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 RPS4Y2Q8TD47 263 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 TSEN15Q8WW01 171 aaKnown RBP10.46□□□□□ -0.73
SKA1-203ENST00000417656 MYDGFQ969H8 173 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 OR51I2Q9H344 312 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 YAE1D1Q9NRH1 226 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 BABAM2Q9NXR7 383 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 TPRKBQ9Y3C4 175 aa10.46□□□□□ -0.73
SKA1-203ENST00000417656 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.45□□□□□ -0.74
SKA1-203ENST00000417656 IGHV3OR15-7A0A075B7D8 119 aa10.45□□□□□ -0.74
SKA1-203ENST00000417656 PNMA8CA0A1B0GUJ8 204 aa10.45□□□□□ -0.74
SKA1-203ENST00000417656 PQLC2LA1A4F0 135 aa10.45□□□□□ -0.74
SKA1-203ENST00000417656 LGALS8O00214 317 aa10.45□□□□□ -0.74
SKA1-203ENST00000417656 RHBDL1O75783 438 aa10.45□□□□□ -0.74
SKA1-203ENST00000417656 MT-ND2P03891 347 aa10.45□□□□□ -0.74
SKA1-203ENST00000417656 RPS2P15880 293 aaKnown RBP10.45□□□□□ -0.74
SKA1-203ENST00000417656 CRHBPP24387 322 aa10.45□□□□□ -0.74
SKA1-203ENST00000417656 WNT4P56705 351 aa10.45□□□□□ -0.74
SKA1-203ENST00000417656 GMFBP60983 142 aa10.45□□□□□ -0.74
SKA1-203ENST00000417656 SEC61A1P61619 476 aaKnown RBP10.45□□□□□ -0.74
SKA1-203ENST00000417656 UBE2V2Q15819 145 aa10.45□□□□□ -0.74
SKA1-203ENST00000417656 FAM76BQ5HYJ3 339 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms