RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ZNRF1Q8ND25 227 aa9.47□□□□□ -0.89
USP4-204ENST00000416417 ANGPTL6Q8NI99 470 aa9.47□□□□□ -0.89
USP4-204ENST00000416417 RORBQ92753 470 aa9.47□□□□□ -0.89
USP4-204ENST00000416417 TNFRSF14Q92956 283 aa9.47□□□□□ -0.89
USP4-204ENST00000416417 UBE2FQ969M7 185 aa9.47□□□□□ -0.89
USP4-204ENST00000416417 ZNF488Q96MN9 340 aa9.47□□□□□ -0.89
USP4-204ENST00000416417 PPA2Q9H2U2 334 aa9.47□□□□□ -0.89
USP4-204ENST00000416417 SLC25A10Q9UBX3 287 aaPredicted RBP9.47□□□□□ -0.89
USP4-204ENST00000416417 LRP12Q9Y561 859 aa9.47□□□□□ -0.89
USP4-204ENST00000416417 MPC1Q9Y5U8 109 aa9.47□□□□□ -0.89
USP4-204ENST00000416417 IGKV1D-17A0A075B6S4 117 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 PRR32B1ATL7 298 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 ZNF732B4DXR9 585 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 ATP8B1O43520 1251 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 CLPXO76031 633 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 CST4P01036 141 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 FBP1P09467 338 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 PAICSP22234 425 aaKnown RBP9.46□□□□□ -0.89
USP4-204ENST00000416417 DCTDP32321 178 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 ERVFRD-1P60508 538 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 EGR3Q06889 387 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 LY6EQ16553 131 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 ATPAF1Q5TC12 328 aaPredicted RBP9.46□□□□□ -0.89
USP4-204ENST00000416417 GDPGP1Q6ZNW5 385 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 ZDHHC23Q8IYP9 409 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 FAM81AQ8TBF8 368 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 CANT1Q8WVQ1 401 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 C12orf43Q96C57 262 aaKnown RBP9.46□□□□□ -0.89
USP4-204ENST00000416417 DUS3LQ96G46 650 aaKnown RBP9.46□□□□□ -0.89
USP4-204ENST00000416417 LRGUKQ96M69 825 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 MMP27Q9H306 513 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 YY1AP1Q9H869 796 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 NLKQ9UBE8 527 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 VPREB3Q9UKI3 123 aa9.46□□□□□ -0.89
USP4-204ENST00000416417 OR2AT4A6NND4 320 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 GNGT2O14610 69 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 TIMM23O14925 209 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 SIGLEC5O15389 551 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 PAHP00439 452 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 ACAA1P09110 424 aaPredicted RBP9.46□□□□□ -0.9
USP4-204ENST00000416417 GLRA1P23415 457 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 EEF1B2P24534 225 aaKnown RBP9.46□□□□□ -0.9
USP4-204ENST00000416417 CEBPDP49716 269 aaPredicted RBP9.46□□□□□ -0.9
USP4-204ENST00000416417 MNAT1P51948 309 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 PSMA6P60900 246 aaKnown RBP9.46□□□□□ -0.9
USP4-204ENST00000416417 APOFQ13790 326 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 HCP5Q6MZN7 132 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 MOB3CQ70IA8 216 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 KRT77Q7Z794 578 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 COMMD2Q86X83 199 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 FAM185AQ8N0U4 392 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 C11orf44Q8N8P7 122 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 TMEM185AQ8NFB2 350 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 OR10Z1Q8NGY1 313 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 C8orf46Q8TAG6 207 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 MUC13Q9H3R2 512 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 RGCCQ9H4X1 137 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 MAB21L2Q9Y586 359 aa9.46□□□□□ -0.9
USP4-204ENST00000416417 BTBD17A6NE02 478 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 ANKRD61A6NGH8 418 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 SLC22A31A6NKX4 558 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 TMEM210A6NLX4 147 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 H3BUX3 64 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 M0R129 80 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 MAGEB4O15481 346 aaPredicted RBP9.45□□□□□ -0.9
USP4-204ENST00000416417 ANGPTL7O43827 346 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 PSG2P11465 335 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 FAHP16930 419 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 SLC2A5P22732 501 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 CAPZA1P52907 286 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 RPL15P61313 204 aaKnown RBP9.45□□□□□ -0.9
USP4-204ENST00000416417 CDK5Q00535 292 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 GUCA2AQ02747 115 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 MFGE8Q08431 387 aaPredicted RBP9.45□□□□□ -0.9
USP4-204ENST00000416417 C11orf91Q3C1V1 193 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 FAM76BQ5HYJ3 339 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 SLC35E4Q6ICL7 350 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 METAP1DQ6UB28 335 aaPredicted RBP9.45□□□□□ -0.9
USP4-204ENST00000416417 C1orf122Q6ZSJ8 110 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 BCDIN3DQ7Z5W3 292 aaKnown RBP9.45□□□□□ -0.9
USP4-204ENST00000416417 ZNF454Q8N9F8 522 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 PPP1R35Q8TAP8 253 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 OR51E1Q8TCB6 317 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 LRTOMTQ8WZ04 291 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 ASB9Q96DX5 294 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 MED30Q96HR3 178 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 HIST1H2AAQ96QV6 131 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 THTPAQ9BU02 230 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 OR51I2Q9H344 312 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 C16orf95Q9H693 158 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 NIPAL2Q9H841 368 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 C19orf12Q9NSK7 152 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 FAM206AQ9NX38 181 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 LAMP5Q9UJQ1 280 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 COPS3Q9UNS2 423 aa9.45□□□□□ -0.9
USP4-204ENST00000416417 CAB39Q9Y376 341 aaPredicted RBP9.45□□□□□ -0.9
USP4-204ENST00000416417 MEX3AA1L020 520 aaKnown RBP9.44□□□□□ -0.9
USP4-204ENST00000416417 CCDC182A6NF36 153 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 A6NIN4 97 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 H0YAE9 185 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms