RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TERB2Q8NHR7 220 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 CDC6Q99741 560 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 PPA2Q9H2U2 334 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 NELFAQ9H3P2 528 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 PINLYPA6NC86 204 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 HPNP05981 417 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 CD79AP11912 226 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 EIF1P41567 113 aaKnown RBP11.73□□□□□ -0.53
VPS54-203ENST00000409558 CLDN15P56746 228 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 ZNF585AQ6P3V2 769 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 CLEC18BQ6UXF7 455 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 MEX3BQ6ZN04 569 aaKnown RBP11.73□□□□□ -0.53
VPS54-203ENST00000409558 CDH26Q8IXH8 852 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 OR10D3Q8NH80 312 aa11.73□□□□□ -0.53
VPS54-203ENST00000409558 ZC3H10Q96K80 434 aaKnown RBP11.73□□□□□ -0.53
VPS54-203ENST00000409558 A0A0A6YYH2 397 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 A6NJ64 397 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 LDLRAD4O15165 306 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 HLA-HP01893 362 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 HGFACQ04756 655 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 ENDOGQ14249 297 aaKnown RBP11.72□□□□□ -0.53
VPS54-203ENST00000409558 DEGS2Q6QHC5 323 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 TIPARPQ7Z3E1 657 aaKnown RBP11.72□□□□□ -0.53
VPS54-203ENST00000409558 SUMF1Q8NBK3 374 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 C5orf66Q9H5L9 145 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 SCPEP1Q9HB40 452 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 EMC3Q9P0I2 261 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 RABL2AQ9UBK7 228 aaPredicted RBP11.72□□□□□ -0.53
VPS54-203ENST00000409558 RABL2BQ9UNT1 228 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 HDGFL3Q9Y3E1 203 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 HSPB2A8KAH6 182 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 TNFSF12O43508 249 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 DIRAS3O95661 229 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 HSPB2Q16082 182 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 CLVS2Q5SYC1 327 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 PRR18Q8N4B5 295 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 CLDN23Q96B33 292 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 PNRC2Q9NPJ4 139 aaKnown RBP11.72□□□□□ -0.53
VPS54-203ENST00000409558 DEPPQ9NTK1 212 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 OR5AC2Q9NZP5 309 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 MCTS1Q9ULC4 181 aaKnown RBP11.72□□□□□ -0.53
VPS54-203ENST00000409558 LHX6Q9UPM6 363 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 LOXL2Q9Y4K0 774 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 DMXL1Q9Y485 3027 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 H3BUI4 141 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 XRCC2O43543 280 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 ZBTB25P24278 435 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 OR2Y1Q8NGV0 311 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 OR14K1Q8NGZ2 314 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 BORCS8Q96FH0 119 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 P4HTMQ9NXG6 502 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 DHRS7CA6NNS2 312 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 ID4P47928 161 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 RAB32Q13637 225 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 SPATA46Q5T0L3 261 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 SLC51BQ86UW2 128 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 PXT1Q8NFP0 134 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 OR56B1Q8NGI3 324 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 OR5L1Q8NGL2 311 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 SGK3Q96BR1 496 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 OR10C1Q96KK4 312 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 ZNF442Q9H7R0 627 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 C12orf4Q9NQ89 552 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 LRFN1Q9P244 771 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 KCNMB2Q9Y691 235 aa11.72□□□□□ -0.53
VPS54-203ENST00000409558 PCP4L1A6NKN8 68 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 ZNF705EA8MWA4 302 aaPredicted RBP11.71□□□□□ -0.53
VPS54-203ENST00000409558 GEMIN2O14893 280 aaKnown RBP11.71□□□□□ -0.53
VPS54-203ENST00000409558 ANKRD55Q3KP44 614 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 PLCXD3Q63HM9 321 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 RAB11FIP2Q7L804 512 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 OR1S2Q8NGQ3 325 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 OR13G1Q8NGZ3 307 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 OR1S1Q8NH92 325 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 NAA11Q9BSU3 229 aaPredicted RBP11.71□□□□□ -0.53
VPS54-203ENST00000409558 TREM1Q9NP99 234 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 TMEM14DPA8MWL7 114 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 Q0VFX4 171 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 AIMP2Q13155 320 aaKnown RBP11.71□□□□□ -0.53
VPS54-203ENST00000409558 ACER2Q5QJU3 275 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 OR2W3Q7Z3T1 314 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 FBXL14Q8N1E6 418 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 TRAF4Q9BUZ4 470 aaPredicted RBP11.71□□□□□ -0.53
VPS54-203ENST00000409558 SLC6A15Q9H2J7 730 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 PROK2Q9HC23 129 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 SLC17A5Q9NRA2 495 aa11.71□□□□□ -0.53
VPS54-203ENST00000409558 FARS2O95363 451 aaKnown RBP11.71□□□□□ -0.54
VPS54-203ENST00000409558 NME2P22392 152 aa11.71□□□□□ -0.54
VPS54-203ENST00000409558 PRKACBP22694 351 aa11.71□□□□□ -0.54
VPS54-203ENST00000409558 IL32P24001 234 aa11.71□□□□□ -0.54
VPS54-203ENST00000409558 DSCR4P56555 118 aaPredicted RBP11.71□□□□□ -0.54
VPS54-203ENST00000409558 HNF4GQ14541 408 aa11.71□□□□□ -0.54
VPS54-203ENST00000409558 DCAF12Q5T6F0 453 aa11.71□□□□□ -0.54
VPS54-203ENST00000409558 DHRS13Q6UX07 377 aa11.71□□□□□ -0.54
VPS54-203ENST00000409558 SLC25A42Q86VD7 318 aa11.71□□□□□ -0.54
VPS54-203ENST00000409558 GTPBP8Q8N3Z3 284 aaPredicted RBP11.71□□□□□ -0.54
VPS54-203ENST00000409558 SPTSSAQ969W0 71 aa11.71□□□□□ -0.54
VPS54-203ENST00000409558 TRAV39A0A0B4J263 110 aa11.7□□□□□ -0.54
VPS54-203ENST00000409558 RCC1P18754 421 aaPredicted RBP11.7□□□□□ -0.54
VPS54-203ENST00000409558 PLGLB1Q02325 96 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms