RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CLDN1O95832 211 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 CSF1P09603 554 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 CBR1P16152 277 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 ZNF32P17041 273 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 GZMKP49863 264 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 GRB2P62993 217 aaKnown RBP11.61□□□□□ -0.55
LIMS1-204ENST00000409441 PSG4Q00888 419 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 TAF13Q15543 124 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 NDUFA5Q16718 116 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 TMEM53Q6P2H8 277 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 SSX8Q7RTT4 187 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 MDP1Q86V88 176 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 LYPD6Q86Y78 171 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 WFDC8Q8IUA0 241 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 PLPP7Q8NBV4 271 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 GJC3Q8NFK1 279 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 SORCS2Q96PQ0 1159 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 BEX2Q9BXY8 128 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 NOX3Q9HBY0 568 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 KLK11Q9UBX7 282 aa11.61□□□□□ -0.55
LIMS1-204ENST00000409441 A0A1B0GVI7 797 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 LDLRAD4O15165 306 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 SYT7O43581 403 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 GMDSO60547 372 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 ERCC1P07992 297 aaPredicted RBP11.6□□□□□ -0.55
LIMS1-204ENST00000409441 IGFBP2P18065 325 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 RAB6AP20340 208 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 BDKRB2P30411 391 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 PLA2G7Q13093 441 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 PABPC1L2AQ5JQF8 200 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 GLYATL3Q5SZD4 288 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 DMRTC2Q8IXT2 367 aaPredicted RBP11.6□□□□□ -0.55
LIMS1-204ENST00000409441 GCDHQ92947 438 aaPredicted RBP11.6□□□□□ -0.55
LIMS1-204ENST00000409441 OR2H1Q9GZK4 316 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 PRSS3P35030 304 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 ZNF83P51522 516 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 EFNB2P52799 333 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 HIST1H3AP68431 136 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 SCRN3Q0VDG4 424 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 TNK1Q13470 666 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 FCN2Q15485 313 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 HIST2H3PS2Q5TEC6 136 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 ZNF774Q6NX45 483 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 ZNF529Q6P280 563 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 HIST2H3AQ71DI3 136 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 CDH26Q8IXH8 852 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 FAM169BQ8N8A8 192 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 CPEB3Q8NE35 698 aaKnown RBP11.6□□□□□ -0.55
LIMS1-204ENST00000409441 OR51A2Q8NGJ7 313 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 AKR7LQ8NHP1 331 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 ZFAND1Q8TCF1 268 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 GIMAP1Q8WWP7 306 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 FGGYQ96C11 551 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 ZNF75AQ96N20 296 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 UQCC2Q9BRT2 126 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 WNT5BQ9H1J7 359 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 ATG5Q9H1Y0 275 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 SLA2Q9H6Q3 261 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 SCPEP1Q9HB40 452 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 PNRC2Q9NPJ4 139 aaKnown RBP11.6□□□□□ -0.55
LIMS1-204ENST00000409441 PTTG3PQ9NZH4 202 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 CRIM1Q9NZV1 1036 aa11.6□□□□□ -0.55
LIMS1-204ENST00000409441 MRPL15Q9P015 296 aaKnown RBP11.6□□□□□ -0.55
LIMS1-204ENST00000409441 HCFC1P51610 2035 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 SPTAN1Q13813 2472 aaKnown RBP11.59□□□□□ -0.55
LIMS1-204ENST00000409441 TRAV18A0A075B6X5 111 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 A0A1B0GTI1 187 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 SGCEO43556 437 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 IGKV3-15P01624 115 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 SERPINA5P05154 406 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 CCL1P22362 96 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 IDH3GP51553 393 aaPredicted RBP11.59□□□□□ -0.55
LIMS1-204ENST00000409441 MECP2P51608 486 aaKnown RBP11.59□□□□□ -0.55
LIMS1-204ENST00000409441 PLP2Q04941 152 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 SPOCK1Q08629 439 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 CCDC92Q53HC0 331 aaPredicted RBP11.59□□□□□ -0.55
LIMS1-204ENST00000409441 METTL11BQ5VVY1 283 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 SP5Q6BEB4 398 aaPredicted RBP11.59□□□□□ -0.55
LIMS1-204ENST00000409441 SEZ6L2Q6UXD5 910 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 MEX3BQ6ZN04 569 aaKnown RBP11.59□□□□□ -0.55
LIMS1-204ENST00000409441 JAGN1Q8N5M9 183 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 ACBD4Q8NC06 268 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 OR1M1Q8NGA1 313 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 OR5D14Q8NGL3 314 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 MED30Q96HR3 178 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 METTL17Q9H7H0 456 aaPredicted RBP11.59□□□□□ -0.55
LIMS1-204ENST00000409441 NGBQ9NPG2 151 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 TMEM138Q9NPI0 162 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 PLEK2Q9NYT0 353 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 CGGBP1Q9UFW8 167 aaPredicted RBP11.59□□□□□ -0.55
LIMS1-204ENST00000409441 RHBDD3Q9Y3P4 386 aa11.59□□□□□ -0.55
LIMS1-204ENST00000409441 GCN1Q92616 2671 aaKnown RBP11.59□□□□□ -0.55
LIMS1-204ENST00000409441 FASNP49327 2511 aaKnown RBP11.58□□□□□ -0.55
LIMS1-204ENST00000409441 M0R1B8 84 aa11.58□□□□□ -0.56
LIMS1-204ENST00000409441 LMX1BO60663 402 aa11.58□□□□□ -0.56
LIMS1-204ENST00000409441 SCGNO76038 276 aa11.58□□□□□ -0.56
LIMS1-204ENST00000409441 NDUFB6O95139 128 aa11.58□□□□□ -0.56
LIMS1-204ENST00000409441 BPNT1O95861 308 aa11.58□□□□□ -0.56
LIMS1-204ENST00000409441 IGLV1-44P01699 117 aa11.58□□□□□ -0.56
LIMS1-204ENST00000409441 ALDOBP05062 364 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms