RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 RDH5Q92781 318 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 REEP6Q96HR9 211 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 NARS2Q96I59 477 aaKnown RBP9.05□□□□□ -0.96
COL6A3-205ENST00000392004 GMPPAQ96IJ6 420 aaPredicted RBP9.05□□□□□ -0.96
COL6A3-205ENST00000392004 ADAM19Q9H013 955 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 RCE1Q9Y256 329 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 LRP12Q9Y561 859 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 NAP1L6A6NFF2 107 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 CD3EP07766 207 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 ARR3P36575 388 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 EFNB1P98172 346 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 ALKBH1Q13686 389 aaKnown RBP9.04□□□□□ -0.96
COL6A3-205ENST00000392004 CLVS2Q5SYC1 327 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 MEX3BQ6ZN04 569 aaKnown RBP9.04□□□□□ -0.96
COL6A3-205ENST00000392004 PRSS45Q7RTY3 260 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 TMED4Q7Z7H5 227 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 SCARB1Q8WTV0 552 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 FLVCR2Q9UPI3 526 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 MS4A18H0YCH9 400 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 TRAPPC2LH3BP13 241 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 TEX46H3BTG2 121 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 UQCRFS1P47985 274 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 MS4A18Q3C1V0 323 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 ANGPTL5Q86XS5 388 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 ZNF679Q8IYX0 411 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 ZNF485Q8NCK3 441 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 OR56B2PQ8NGI1 322 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 OR10Z1Q8NGY1 313 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 OR6X1Q8NH79 312 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 ASB10Q8WXI3 467 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 S100PBPQ96BU1 408 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 SEC22CQ9BRL7 303 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 ST6GALNAC5Q9BVH7 336 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 MS4A7Q9GZW8 240 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-205ENST00000392004 ZNF281Q9Y2X9 895 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 TMEM131Q92545 1883 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 A0A0B4J203 849 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 MFSD2BA6NFX1 497 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 NPIPB9F8W1W9 429 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 ARPC5O15511 151 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 PMS2P2O95744 297 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 GIPP09681 153 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-205ENST00000392004 MPGP29372 298 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 GLYATL3Q5SZD4 288 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 ZCCHC24Q8N2G6 241 aaKnown RBP9.04□□□□□ -0.96
COL6A3-205ENST00000392004 NPEPL1Q8NDH3 523 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 TMEM185AQ8NFB2 350 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 DCAF16Q9NXF7 216 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 KCNS2Q9ULS6 477 aa9.04□□□□□ -0.96
COL6A3-205ENST00000392004 A0A1W2PRD5 423 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 A0A1W2PRF3 423 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 A0A1W2PRM7 423 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 E9PI62 339 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 S100A11P31949 105 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 CCR9P51686 369 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 GK2Q14410 553 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-205ENST00000392004 NR2C2APQ86WQ0 139 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 SKA3Q8IX90 412 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 SEMA6DQ8NFY4 1073 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 OR51D1Q8NGF3 324 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 FCAMRQ8WWV6 532 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 CXorf58Q96LI9 332 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 UQCC2Q9BRT2 126 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 PBOV1Q9GZY1 135 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 TAS2R4Q9NYW5 299 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 COPS3Q9UNS2 423 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 ACANP16112 2415 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 ARPC3O15145 178 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 GATBO75879 557 aaKnown RBP9.03□□□□□ -0.96
COL6A3-205ENST00000392004 IGHV3-13P01766 116 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 IGHV3-7P01780 117 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 CTSSP25774 331 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 HAAOP46952 286 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 SLC17A1Q14916 467 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 RAB11BQ15907 218 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 EMC4Q5J8M3 183 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 ZNF454Q8N9F8 522 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 STEAP2Q8NFT2 490 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 SELENOIQ9C0D9 397 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 SHARPINQ9H0F6 387 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 NOX3Q9HBY0 568 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 INPP5EQ9NRR6 644 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 PLEKHJ1Q9NW61 149 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 PPP3CBP16298 524 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 GPM6AP51674 278 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 KIAA2026Q5HYC2 2103 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 NHLRC3Q5JS37 347 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 BRICD5Q6PL45 260 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 SLC25A26Q70HW3 274 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 OVCH2Q7RTZ1 564 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 FBXL14Q8N1E6 418 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 ABHD5Q8WTS1 349 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 CCDC107Q8WV48 283 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 OR2J1Q9GZK6 312 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 MLXQ9UH92 298 aa9.03□□□□□ -0.96
COL6A3-205ENST00000392004 SIRT4Q9Y6E7 314 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-205ENST00000392004 A0A1B0GUH1 482 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 H7C2Y5 167 aa9.02□□□□□ -0.96
COL6A3-205ENST00000392004 PPIHO43447 177 aaKnown RBP9.02□□□□□ -0.96
COL6A3-205ENST00000392004 SPRY1O43609 319 aaPredicted RBP9.02□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms