RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PPIHO43447 177 aaKnown RBP11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 ZNF207O43670 478 aaKnown RBP11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 EPXP11678 715 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 NME1P15531 152 aaKnown RBP11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 NHLH1Q02575 133 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 NHLH2Q02577 135 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 TMEM267Q0VDI3 215 aaPredicted RBP11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 CDC20Q12834 499 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 RPEL1Q2QD12 228 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 OR5M9Q8NGP3 310 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 TEX101Q9BY14 249 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 UQCC1Q9NVA1 299 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 SMIM18P0DKX4 95 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 PMCHP20382 165 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 FOXC1Q12948 553 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 OR10V1Q8NGI7 309 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 LRP12Q9Y561 859 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 TRAV17A0A0B4J275 112 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 RHOBP62745 196 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 TMEM240Q5SV17 173 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 RNASEKQ6P5S7 137 aaKnown RBP11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 EIF4E3Q8N5X7 224 aaKnown RBP11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 ZDHHC22Q8N966 263 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 PPIL1Q9Y3C6 166 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 SP1P08047 785 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 MMP7P09237 267 aaPredicted RBP11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 CCKARP32238 428 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 TRA2AQ13595 282 aaKnown RBP eCLIP11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 DHRS11Q6UWP2 260 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 SPEM1Q8N4L4 309 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 OR1L1Q8NH94 360 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 A0A0A6YYD5 115 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 KLK8O60259 260 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 SFTA3P0C7M3 94 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 TUSC1Q2TAM9 212 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 NHLRC1Q6VVB1 395 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 TMEM208Q9BTX3 173 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 RHOFQ9HBH0 211 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 NAGKQ9UJ70 344 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 C11orf87Q6NUJ2 197 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 AUNIPQ9H7T9 357 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 SLC25A37Q9NYZ2 338 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 TMED3Q9Y3Q3 217 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 NRAPQ86VF7 1730 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 ARID1BQ8NFD5 2236 aaPredicted RBP11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 URB1O60287 2271 aaKnown RBP11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 SPCS3P61009 180 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 CLEC9AQ6UXN8 241 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 OR11G2Q8NGC1 345 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 MMP26Q9NRE1 261 aa11.49□□□□□ -0.57
CCDC88C-204ENST00000389857 ALG1L2C9J202 215 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 CEACAM3P40198 252 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 PPP2CBP62714 309 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 PPP2CAP67775 309 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 NPEPL1Q8NDH3 523 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 OR4C3Q8NH37 302 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 CACNA1SQ13698 1873 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 TIPARPQ7Z3E1 657 aaKnown RBP11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 OR6S1Q8NH40 331 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 YIPF6Q96EC8 236 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 RAB40CQ96S21 281 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 CYR61O00622 381 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 KLK10O43240 276 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 DCTDP32321 178 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 OTOSQ8NHW6 89 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 CA5BP1Q8WTZ4 195 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 C19orf43Q9BQ61 176 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 TCRBV5S1A1TA0A578 114 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 TCRBV5S2A0A599 114 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 SLC17A2O00624 439 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 FCMRO60667 390 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 PCBP3P57721 371 aaKnown RBP11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 CLEC12BQ2HXU8 276 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 SFTPA2Q8IWL1 248 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 SFTPA1Q8IWL2 248 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 CCL4L1Q8NHW4 92 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 ALKBH3Q96Q83 286 aaPredicted RBP11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 DOK1Q99704 481 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 GPANK1O95872 356 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 IGLV3-27P01718 113 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 ETFDHQ16134 617 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 GPR137Q96N19 417 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 RAB1BQ9H0U4 201 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 GYPAP02724 150 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 GFERP55789 205 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 FAHD1Q6P587 224 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 VWA1Q6PCB0 445 aa11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 RELL2Q8NC24 303 aaPredicted RBP11.48□□□□□ -0.57
CCDC88C-204ENST00000389857 NGFP01138 241 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 IL11RAQ14626 422 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 SMIM4Q8WVI0 70 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 ECM29Q5VYK3 1845 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 ZNF83P51522 516 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 EIF3IQ13347 325 aaKnown RBP11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 AGERQ15109 404 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 OR52B4Q8NGK2 314 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 OR13G1Q8NGZ3 307 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 CLEC5AQ9NY25 188 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 LMO7DNF2Z398 122 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms