RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 OR52W1Q6IF63 320 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 INO80CQ6PI98 192 aaPredicted RBP18.82■□□□□ 0.6
TRIM54-202ENST00000380075 LYG2Q86SG7 212 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 OR1F12Q8NHA8 337 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 TMEM45BQ96B21 275 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 ZNF837Q96EG3 531 aaPredicted RBP18.82■□□□□ 0.6
TRIM54-202ENST00000380075 BANF2Q9H503 90 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 B4GALT7Q9UBV7 327 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 MGAQ8IWI9 3026 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 DSPP15924 2871 aaKnown RBP18.81■□□□□ 0.6
TRIM54-202ENST00000380075 SOCS1O15524 211 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 IL2RAP01589 272 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 CSN2P05814 226 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 FAHP16930 419 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 CD34P28906 385 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 S100A11P31949 105 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 RAB14P61106 215 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 UBE2V2Q15819 145 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 ABHD17BQ5VST6 288 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 DCAF12L2Q5VW00 463 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 THOC7Q6I9Y2 204 aaKnown RBP18.81■□□□□ 0.6
TRIM54-202ENST00000380075 LIN54Q6MZP7 749 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 ARRDC1Q8N5I2 433 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 OR5M8Q8NGP6 311 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 OR4K15Q8NH41 348 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 SPSB1Q96BD6 273 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 S100A13Q99584 98 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 HLA-AP01891 365 aaKnown RBP18.81■□□□□ 0.6
TRIM54-202ENST00000380075 HLA-GP17693 338 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 ZBTB25P24278 435 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 UCNP55089 124 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 TMEM50BP56557 158 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 TAS2R31P59538 309 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 KRTAP27-1Q3LI81 207 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 NRN1LQ496H8 165 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 SLC22A6Q4U2R8 563 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 SEMA6DQ8NFY4 1073 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 ROBO4Q8WZ75 1007 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 FOXB1Q99853 325 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 TM2D1Q9BX74 207 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 KCNN3Q9UGI6 736 aa18.81■□□□□ 0.6
TRIM54-202ENST00000380075 PCSK5Q92824 1860 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 OR6C6A6NF89 314 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 RFPL4AA6NLU0 287 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 RFPL4AL1F8VTS6 287 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 CA11O75493 328 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 CD8AP01732 235 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 DBHP09172 617 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 STARP49675 285 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 PPA1Q15181 289 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 CRIP3Q6Q6R5 217 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 C3P1Q6ZMU1 363 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 OR51T1Q8NGJ9 327 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 SGK3Q96BR1 496 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 WDR89Q96FK6 387 aaPredicted RBP18.8■□□□□ 0.6
TRIM54-202ENST00000380075 CITED4Q96RK1 184 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 TIMM10BQ9Y5J6 103 aa18.8■□□□□ 0.6
TRIM54-202ENST00000380075 MED12Q93074 2177 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 RPS10-NUDT3A0A1W2PQS6 291 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 PINLYPA6NC86 204 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 LEUTXA8MZ59 168 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 FCGR2AP12318 317 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 ZNF24P17028 368 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 AGTR1P30556 359 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 NTF4P34130 210 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 LY6G6FQ5SQ64 297 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 OR2M7Q8NG81 312 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 MRGPRFQ96AM1 343 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 ZNF775Q96BV0 537 aaPredicted RBP18.79■□□□□ 0.6
TRIM54-202ENST00000380075 IP6K3Q96PC2 410 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 GSX2Q9BZM3 304 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 RGCCQ9H4X1 137 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 NOP16Q9Y3C1 178 aaKnown RBP18.79■□□□□ 0.6
TRIM54-202ENST00000380075 MAP1BP46821 2468 aaKnown RBP18.79■□□□□ 0.6
TRIM54-202ENST00000380075 FXYD6-FXYD2A0A087WZ82 144 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 FOXI3A8MTJ6 420 aaPredicted RBP18.79■□□□□ 0.6
TRIM54-202ENST00000380075 SERPINE3A8MV23 424 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 ARPC5O15511 151 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 HPNP05981 417 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 RPA2P15927 270 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 MGMTP16455 207 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 CPT2P23786 658 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 CLDN15P56746 228 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 DEFB109BQ30KR1 87 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 SNAI3Q3KNW1 292 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 HOGA1Q86XE5 327 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 MITD1Q8WV92 249 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 ARHGAP5-AS1Q96IT6 56 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 FXYD6Q9H0Q3 95 aa18.79■□□□□ 0.6
TRIM54-202ENST00000380075 IGKV3D-15A0A087WSY6 115 aa18.78■□□□□ 0.6
TRIM54-202ENST00000380075 CEACAM18A8MTB9 384 aa18.78■□□□□ 0.6
TRIM54-202ENST00000380075 RP2O75695 350 aa18.78■□□□□ 0.6
TRIM54-202ENST00000380075 NEURL1O76050 574 aa18.78■□□□□ 0.6
TRIM54-202ENST00000380075 PPP3CBP16298 524 aa18.78■□□□□ 0.6
TRIM54-202ENST00000380075 STK11Q15831 433 aa18.78■□□□□ 0.6
TRIM54-202ENST00000380075 TMUB2Q71RG4 321 aa18.78■□□□□ 0.6
TRIM54-202ENST00000380075 SULF2Q8IWU5 870 aa18.78■□□□□ 0.6
TRIM54-202ENST00000380075 MARVELD3Q96A59 401 aa18.78■□□□□ 0.6
TRIM54-202ENST00000380075 SCGB3A2Q96PL1 93 aa18.78■□□□□ 0.6
TRIM54-202ENST00000380075 ALKBH3Q96Q83 286 aaPredicted RBP18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms