RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TAS2R31P59538 309 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 HGFACQ04756 655 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 CCDC157Q569K6 752 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 RAB11FIP2Q7L804 512 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 KCNRGQ8N5I3 272 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 OR5M9Q8NGP3 310 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 OR5H2Q8NGV7 314 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 OR2V1Q8NHB1 315 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 DMRTA2Q96SC8 542 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 C5orf66Q9H5L9 145 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 NARFLQ9H6Q4 476 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 SDHAF2Q9NX18 166 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 PINLYPA6NC86 204 aa18.19■□□□□ 0.5
CCDC88B-203ENST00000359902 MFSD2BA6NFX1 497 aa18.19■□□□□ 0.5
CCDC88B-203ENST00000359902 AMY2BP19961 511 aa18.19■□□□□ 0.5
CCDC88B-203ENST00000359902 ACKR3P25106 362 aa18.19■□□□□ 0.5
CCDC88B-203ENST00000359902 CYB561P49447 251 aa18.19■□□□□ 0.5
CCDC88B-203ENST00000359902 ZNF528Q3MIS6 628 aa18.19■□□□□ 0.5
CCDC88B-203ENST00000359902 TMEM128Q5BJH2 165 aa18.19■□□□□ 0.5
CCDC88B-203ENST00000359902 SEMA6DQ8NFY4 1073 aa18.19■□□□□ 0.5
CCDC88B-203ENST00000359902 OR2AE1Q8NHA4 323 aa18.19■□□□□ 0.5
CCDC88B-203ENST00000359902 OR1F12Q8NHA8 337 aa18.19■□□□□ 0.5
CCDC88B-203ENST00000359902 S100A13Q99584 98 aa18.19■□□□□ 0.5
CCDC88B-203ENST00000359902 MRPS18CQ9Y3D5 142 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-203ENST00000359902 WDFY4Q6ZS81 3184 aa18.19■□□□□ 0.5
CCDC88B-203ENST00000359902 HPNP05981 417 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 ZNF883P0CG24 379 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 ZNF345Q14585 488 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 ABLIM2Q6H8Q1 611 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 JMJD6Q6NYC1 403 aaPredicted RBP18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 TMEM185AQ8NFB2 350 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 ALKBH3Q96Q83 286 aaPredicted RBP18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 TAAR9Q96RI9 348 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 ZPBPQ9BS86 351 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 C1QTNF6Q9BXI9 259 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 SPRY4Q9C004 299 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 GPR173Q9NS66 373 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 SPEF1Q9Y4P9 236 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 OR2F2O95006 317 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 F10P00742 488 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 RLN2P04090 185 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 PATE4P0C8F1 98 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 OR2F1Q13607 317 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 TMEM230Q96A57 120 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 ARPC5LQ9BPX5 153 aa18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 ELL3Q9HB65 397 aaPredicted RBP18.18■□□□□ 0.5
CCDC88B-203ENST00000359902 B4GALT1P15291 398 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 ZNF32P17041 273 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 RGS19P49795 217 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 SNU13P55769 128 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 GALNTL5Q7Z4T8 443 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 LHFPL1Q86WI0 220 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 OR13G1Q8NGZ3 307 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 REEP6Q96HR9 211 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 STRADBQ9C0K7 418 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 WDR13Q9H1Z4 485 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 ARRDC1-AS1Q9H2J1 176 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 RNF222A6NCQ9 220 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 OR6C6A6NF89 314 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 DHRS7CA6NNS2 312 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 PRKACBP22694 351 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 GDF1P27539 372 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 MPLP40238 635 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 SCRN3Q0VDG4 424 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 FOXO1Q12778 655 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 KRTAP27-1Q3LI81 207 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 PEG10Q86TG7 708 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 SULF2Q8IWU5 870 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 AKR7LQ8NHP1 331 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 ST8SIA2Q92186 375 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 VRK1Q99986 396 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 KCNMB2Q9Y691 235 aa18.17■□□□□ 0.5
CCDC88B-203ENST00000359902 SERPINE3A8MV23 424 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 EEF1E1-BLOC1S5C9J1V9 151 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 CNR1P21554 472 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 CPT2P23786 658 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 OR3A2P47893 321 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 GFRA1P56159 465 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 MTCP1P56278 107 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 AADACL3Q5VUY0 350 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 CSNK2A3Q8NEV1 391 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 MAFIPQ8WZ33 124 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 RTBDNQ9BSG5 229 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 SDCBPO00560 298 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 SCO1O75880 301 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 FPR2P25090 351 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 UBA52P62987 128 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 PSG4Q00888 419 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 ATXN7L3Q14CW9 347 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 SPINK14Q6IE38 97 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 ACOT7LQ6ZUV0 252 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 CCDC120Q96HB5 630 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 FOXB1Q99853 325 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 OSGIN2Q9Y236 505 aa18.16■□□□□ 0.5
CCDC88B-203ENST00000359902 FREM2Q5SZK8 3169 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 LCATP04180 440 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 TMEM225BP0DP42 221 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 PI3P19957 117 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 SERPINF1P36955 418 aa18.15■□□□□ 0.5
CCDC88B-203ENST00000359902 TAS2R46P59540 309 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms