RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 MAFIPQ8WZ33 124 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 SGK3Q96BR1 496 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 PECRQ9BY49 303 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP19.05■□□□□ 0.64
SHMT1-202ENST00000352886 MBD2Q9UBB5 411 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 PADI1Q9ULC6 663 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 CCDC187A0A096LP49 1063 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 CEACAM18A8MTB9 384 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 SGCEO43556 437 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 RFPL3SP0C7P2 107 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 SERPINF1P36955 418 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 OR3A2P47893 321 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 BAMBIQ13145 260 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 OR52H1Q8NGJ2 320 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 OR2AE1Q8NHA4 323 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 C10orf35Q96D05 121 aa19.05■□□□□ 0.64
SHMT1-202ENST00000352886 B4E171 279 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 SDCBPO00560 298 aaPredicted RBP19.04■□□□□ 0.64
SHMT1-202ENST00000352886 HTR3BO95264 441 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 TCN2P20062 427 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 TSPAN7P41732 249 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 FAM74A1Q5RGS3 127 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 GPR137CQ8N3F9 429 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 CSNK2A3Q8NEV1 391 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 KCNE4Q8WWG9 221 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 ROBO4Q8WZ75 1007 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 ALKBH3Q96Q83 286 aaPredicted RBP19.04■□□□□ 0.64
SHMT1-202ENST00000352886 ZDBF2Q9HCK1 2354 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 A8MXK9 166 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 HPP00738 406 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 CRYGSP22914 178 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 NUP62P37198 522 aaPredicted RBP19.04■□□□□ 0.64
SHMT1-202ENST00000352886 RAB35Q15286 201 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 GALNT11Q8NCW6 608 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 TMEM185AQ8NFB2 350 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 OR13G1Q8NGZ3 307 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 ZNF75AQ96N20 296 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 TM2D1Q9BX74 207 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 ZNF471Q9BX82 626 aaPredicted RBP19.04■□□□□ 0.64
SHMT1-202ENST00000352886 SLC25A32Q9H2D1 315 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 GPR173Q9NS66 373 aa19.04■□□□□ 0.64
SHMT1-202ENST00000352886 COL27A1Q8IZC6 1860 aaPredicted RBP19.03■□□□□ 0.64
SHMT1-202ENST00000352886 CXCL13O43927 109 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 ICAM2P13598 275 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 CPT2P23786 658 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 FPR2P25090 351 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 ACKR3P25106 362 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 STARP49675 285 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 CHAF1BQ13112 559 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 SLC9A3R2Q15599 337 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 ZNF774Q6NX45 483 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 GALNTL5Q7Z4T8 443 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 TMEM17Q86X19 198 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 SEMA6DQ8NFY4 1073 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 CHMP1AQ9HD42 196 aaPredicted RBP19.03■□□□□ 0.64
SHMT1-202ENST00000352886 LRRC3CA6NJW4 275 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 ZNF716A6NP11 495 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 LGALS8O00214 317 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 SYNGR3O43761 229 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 TSPAN9O75954 239 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 CRHP06850 196 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 GP1BAP07359 652 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 FGF2P09038 288 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 TUSC1Q2TAM9 212 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 DRAM2Q6UX65 266 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 CLEC18BQ6UXF7 455 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 PEG10Q86TG7 708 aaKnown RBP19.03■□□□□ 0.64
SHMT1-202ENST00000352886 LHFPL1Q86WI0 220 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 INO80EQ8NBZ0 244 aaPredicted RBP19.03■□□□□ 0.64
SHMT1-202ENST00000352886 CCDC54Q8NEL0 328 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 EHFQ9NZC4 300 aa19.03■□□□□ 0.64
SHMT1-202ENST00000352886 DOCK10Q96BY6 2186 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 SERPINE3A8MV23 424 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 KCNAB3O43448 404 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 TRAPPC6AO75865 159 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 SFT2D2O95562 160 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 B4GALT1P15291 398 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 PSMB6P28072 239 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 TAS2R46P59540 309 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 HGFACQ04756 655 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 WIPI1Q5MNZ9 446 aaPredicted RBP19.02■□□□□ 0.64
SHMT1-202ENST00000352886 AADACL3Q5VUY0 350 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 BVESQ8NE79 360 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 MICU1Q9BPX6 476 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 RTBDNQ9BSG5 229 aaPredicted RBP19.02■□□□□ 0.64
SHMT1-202ENST00000352886 TMEM38BQ9NVV0 291 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 RASL12Q9NYN1 266 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 PRR13Q9NZ81 148 aa19.02■□□□□ 0.64
SHMT1-202ENST00000352886 GABRR1P24046 479 aa19.02■□□□□ 0.63
SHMT1-202ENST00000352886 MTCP1P56278 107 aa19.02■□□□□ 0.63
SHMT1-202ENST00000352886 ZXDAP98168 799 aa19.02■□□□□ 0.63
SHMT1-202ENST00000352886 ACER2Q5QJU3 275 aa19.02■□□□□ 0.63
SHMT1-202ENST00000352886 AAED1Q7RTV5 226 aa19.02■□□□□ 0.63
SHMT1-202ENST00000352886 TIPARPQ7Z3E1 657 aaKnown RBP19.02■□□□□ 0.63
SHMT1-202ENST00000352886 PXT1Q8NFP0 134 aa19.02■□□□□ 0.63
SHMT1-202ENST00000352886 CT55Q8WUE5 264 aa19.02■□□□□ 0.63
SHMT1-202ENST00000352886 REEP6Q96HR9 211 aa19.02■□□□□ 0.63
SHMT1-202ENST00000352886 SCGB3A2Q96PL1 93 aa19.02■□□□□ 0.63
SHMT1-202ENST00000352886 ZNF701Q9NV72 531 aaPredicted RBP19.02■□□□□ 0.63
SHMT1-202ENST00000352886 LOXL2Q9Y4K0 774 aa19.02■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms