RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 IGHV3-20A0A0C4DH32 117 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 EIF1BO60739 113 aaKnown RBP19.72■□□□□ 0.75
TRIM28-202ENST00000341753 EIF1P41567 113 aaKnown RBP19.72■□□□□ 0.75
TRIM28-202ENST00000341753 DAP3P51398 398 aaKnown RBP19.72■□□□□ 0.75
TRIM28-202ENST00000341753 ACY1Q03154 408 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 MFAP5Q13361 173 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 CARD17Q5XLA6 110 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 H1FNTQ75WM6 255 aaPredicted RBP19.72■□□□□ 0.75
TRIM28-202ENST00000341753 OR8B12Q8NGG6 310 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 ZNF701Q9NV72 531 aaPredicted RBP19.72■□□□□ 0.75
TRIM28-202ENST00000341753 ANAPC10Q9UM13 185 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 IGKV1D-8A0A087WSZ0 117 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 A0A1W2PQD3 144 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 CEACAM18A8MTB9 384 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 ZNF205O95201 554 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 AGAP20933 346 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 ACTBL2Q562R1 376 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 ZNF561Q8N587 486 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 OIT3Q8WWZ8 545 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 EIF5A2Q9GZV4 153 aaKnown RBP19.71■□□□□ 0.75
TRIM28-202ENST00000341753 B3GALT5Q9Y2C3 310 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 KPTNQ9Y664 436 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 MED12Q93074 2177 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 C5orf63A6NC05 138 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 CSNK1EP49674 416 aaKnown RBP19.71■□□□□ 0.75
TRIM28-202ENST00000341753 C1orf189Q5VU69 101 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 SLC25A43Q8WUT9 341 aaPredicted RBP19.71■□□□□ 0.75
TRIM28-202ENST00000341753 OR5B2Q96R09 309 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 OCSTAMPQ9BR26 566 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 BCL2L14Q9BZR8 327 aa19.71■□□□□ 0.75
TRIM28-202ENST00000341753 IGKV3D-11A0A0A0MRZ8 115 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 A0A1W2PR77 199 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 TAAR5O14804 337 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 CLN5O75503 358 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 MT-ND4LP03901 98 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 GIMD1P0DJR0 217 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 ZNF121P58317 390 aaPredicted RBP19.7■□□□□ 0.74
TRIM28-202ENST00000341753 ACER2Q5QJU3 275 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 LANCL3Q6ZV70 420 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 OR9K2Q8NGE7 335 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 LHFPL6Q9Y693 200 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 A0A1W2PPE2 198 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 RBMXP38159 391 aaKnown RBP19.7■□□□□ 0.74
TRIM28-202ENST00000341753 OR56B1Q8NGI3 324 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 EDARADDQ8WWZ3 215 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 DAZLQ92904 295 aaKnown RBP19.7■□□□□ 0.74
TRIM28-202ENST00000341753 MRPL24Q96A35 216 aaKnown RBP19.7■□□□□ 0.74
TRIM28-202ENST00000341753 LIN37Q96GY3 246 aaPredicted RBP19.7■□□□□ 0.74
TRIM28-202ENST00000341753 SEBOXQ9HB31 216 aaPredicted RBP19.7■□□□□ 0.74
TRIM28-202ENST00000341753 FBLN5Q9UBX5 448 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 MEMO1Q9Y316 297 aa19.7■□□□□ 0.74
TRIM28-202ENST00000341753 ZNF878C9JN71 531 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 RER1O15258 196 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 OR8U8P0C7N1 319 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 ZNF17P17021 662 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 BLVRBP30043 206 aaPredicted RBP19.69■□□□□ 0.74
TRIM28-202ENST00000341753 NCMAPQ5T1S8 102 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 COL13A1Q5TAT6 717 aaPredicted RBP19.69■□□□□ 0.74
TRIM28-202ENST00000341753 CDCP2Q5VXM1 449 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 TMPRSS9Q7Z410 1059 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 ZNF285Q96NJ3 590 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 SCGB3A2Q96PL1 93 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 OR10A2Q9H208 303 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 IGKV1-9A0A0C4DH69 117 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 IFNA2P01563 188 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 HPNP05981 417 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 GLI4P10075 376 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 CHRFAM7AQ494W8 412 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 FAM57BQ71RH2 274 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 NUDT16L1Q9BRJ7 211 aaKnown RBP19.69■□□□□ 0.74
TRIM28-202ENST00000341753 COPS7AQ9UBW8 275 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 TINAGQ9UJW2 476 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 CNTRLQ7Z7A1 2325 aa19.69■□□□□ 0.74
TRIM28-202ENST00000341753 RAB5AP20339 215 aa19.68■□□□□ 0.74
TRIM28-202ENST00000341753 SERPINA2P20848 420 aa19.68■□□□□ 0.74
TRIM28-202ENST00000341753 GUK1Q16774 197 aa19.68■□□□□ 0.74
TRIM28-202ENST00000341753 RSPO4Q2I0M5 234 aaPredicted RBP19.68■□□□□ 0.74
TRIM28-202ENST00000341753 CD300LFQ8TDQ1 290 aa19.68■□□□□ 0.74
TRIM28-202ENST00000341753 HDHD3Q9BSH5 251 aaPredicted RBP19.68■□□□□ 0.74
TRIM28-202ENST00000341753 ELL3Q9HB65 397 aaPredicted RBP19.68■□□□□ 0.74
TRIM28-202ENST00000341753 SUSD2Q9UGT4 822 aa19.68■□□□□ 0.74
TRIM28-202ENST00000341753 C14orf166Q9Y224 244 aaKnown RBP19.68■□□□□ 0.74
TRIM28-202ENST00000341753 CD27P26842 260 aa19.68■□□□□ 0.74
TRIM28-202ENST00000341753 FBXW4P57775 412 aa19.68■□□□□ 0.74
TRIM28-202ENST00000341753 FNDC9Q8TBE3 224 aa19.68■□□□□ 0.74
TRIM28-202ENST00000341753 PRRX2Q99811 253 aa19.68■□□□□ 0.74
TRIM28-202ENST00000341753 CHST11Q9NPF2 352 aa19.68■□□□□ 0.74
TRIM28-202ENST00000341753 COL6A3P12111 3177 aa19.68■□□□□ 0.74
TRIM28-202ENST00000341753 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 TLCD2A6NGC4 264 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 E9PLN8 166 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 THBS4P35443 961 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 CFHR1Q03591 330 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 SP6Q3SY56 376 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 FBXO7Q9Y3I1 522 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 MMACHCQ9Y4U1 282 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 RHPN2P1A8MT19 583 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 XRCC2O43543 280 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 JTBO76095 146 aa19.67■□□□□ 0.74
TRIM28-202ENST00000341753 PAX6P26367 422 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms