RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 NAA60Q9H7X0 242 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 TBX21Q9UL17 535 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 KLF13Q9Y2Y9 288 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 ZNF318Q5VUA4 2279 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 NPBWR1P48145 328 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 PRICKLE4Q2TBC4 344 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 OR2A2Q6IF42 318 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 C11orf40Q8WZ69 217 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 ZNF707Q96C28 371 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 DNPH1O43598 174 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 P2RY1P47900 373 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 MAMSTRQ6ZN01 415 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 ZNF574Q6ZN55 896 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 OR13H1Q8NG92 308 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 OR1F12Q8NHA8 337 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 LTB4R2Q9NPC1 389 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 PLSCR3Q9NRY6 295 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 TIMM8BQ9Y5J9 83 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 PRRT4C9JH25 899 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 CLDN34H7C241 214 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 TRA2AQ13595 282 aaKnown RBP eCLIP9.24□□□□□ -0.932e-6■■■■■ 27.7
CCDC88A-202ENST00000336838 KLF9Q13886 244 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 RSPO2Q6UXX9 243 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 PIGTQ969N2 578 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 FBXW5Q969U6 566 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 ERHP84090 104 aaKnown RBP9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 HAGHQ16775 308 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 OR13C5Q8NGS8 318 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 NUBPLQ8TB37 319 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 URGCP-MRPS24S4R325 110 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 LSM6P62312 80 aaKnown RBP9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 ZNF90Q03938 601 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 CNEP1R1Q8N9A8 125 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 MFRPQ9BY79 579 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 TPSD1Q9BZJ3 242 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 MBNL1Q9NR56 388 aaKnown RBP9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 HSD17B6O14756 317 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 PTGFRP43088 359 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 ETFRF1Q6IPR1 90 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 ZFP62Q8NB50 900 aaPredicted RBP9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 IL21Q9HBE4 155 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 GPR173Q9NS66 373 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 AP4M1O00189 453 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 IL24Q13007 206 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 DGAT2L6Q6ZPD8 337 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 ZNF429Q86V71 674 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 PSENENQ9NZ42 101 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 TNFSF14O43557 240 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 GATCO43716 136 aaKnown RBP9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 CTSDP07339 412 aaPredicted RBP9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 PGFP49763 221 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 FOXO1Q12778 655 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 ZNF439Q8NDP4 499 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 RPUSD4Q96CM3 377 aaKnown RBP9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 A0A1B0GTQ1 180 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 ZC3H12DA2A288 527 aaKnown RBP9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 GPANK1O95872 356 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 ZIC1Q15915 447 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 CADM4Q8NFZ8 388 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 PARP11Q9NR21 331 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 ELF5Q9UKW6 265 aaPredicted RBP9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 FAM74A7A6NL05 159 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 FAM166BA8MTA8 275 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 CCSO14618 274 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 CSF2RBP32927 897 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 C1orf53Q5VUE5 145 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 SUMF1Q8NBK3 374 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 DSPPQ9NZW4 1301 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 MFNGO00587 321 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 PRICKLE3O43900 615 aaPredicted RBP9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 GZMMP51124 257 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 HTRA4P83105 476 aaPredicted RBP9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 AGERQ15109 404 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 AKR1E2Q96JD6 320 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 FLVCR2Q9UPI3 526 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 SCN5AQ14524 2016 aa9.23□□□□□ -0.93
CCDC88A-202ENST00000336838 MYO7BQ6PIF6 2116 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 OR5B21A6NL26 309 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 GAPDHP04406 335 aaKnown RBP9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 ABHD1Q96SE0 405 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 RAB7AP51149 207 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 TESK1Q15569 626 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 ANKRD34AQ69YU3 496 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 ZNF793Q6ZN11 406 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 SHISA6Q6ZSJ9 500 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 SSX8Q7RTT4 187 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 OR52N4Q8NGI2 321 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 CLEC18AA5D8T8 446 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 RNF4P78317 190 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 TIAL1Q01085 375 aaKnown RBP eCLIP9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 C4orf17Q53FE4 359 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 CLEC18CQ8NCF0 446 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 OR6X1Q8NH79 312 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 TMEM204Q9BSN7 226 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 UQCC1Q9NVA1 299 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 WSB1Q9Y6I7 421 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 PPP1R1AQ13522 171 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 C1orf174Q8IYL3 243 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 TMEFF1Q8IYR6 380 aa9.22□□□□□ -0.93
CCDC88A-202ENST00000336838 NDFIP1Q9BT67 221 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms