RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 FOXN4Q96NZ1 517 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 MPC2O95563 127 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 INHBBP09529 407 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 CTSCP53634 463 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 SNX22Q96L94 193 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 KLF16Q9BXK1 252 aaPredicted RBP12.92□□□□□ -0.34
COL7A1-201ENST00000328333 FITM1A5D6W6 292 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 SUMO3P55854 103 aaPredicted RBP12.92□□□□□ -0.34
COL7A1-201ENST00000328333 CALHM3Q86XJ0 350 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 OR1L3Q8NH93 324 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 OR1L1Q8NH94 360 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 PYCARD-AS1I3L0S3 204 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 SMAD6O43541 496 aaKnown RBP12.92□□□□□ -0.34
COL7A1-201ENST00000328333 RIMKLAQ8IXN7 391 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 OIT3Q8WWZ8 545 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 TMEM37Q8WXS4 190 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 PRTGQ2VWP7 1150 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 STARD5Q9NSY2 213 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 OBP2AQ9NY56 170 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 FAM87AP0C7U9 286 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 LGALSLQ3ZCW2 172 aaPredicted RBP12.92□□□□□ -0.34
COL7A1-201ENST00000328333 BANF2Q9H503 90 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 SH2D2AQ9NP31 389 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 KIR3DX1Q9H7L2 352 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 CD207Q9UJ71 328 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 PPP1R3CQ9UQK1 317 aa12.92□□□□□ -0.34
COL7A1-201ENST00000328333 NHSQ6T4R5 1651 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 SCRG1O75711 98 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 GCGP01275 180 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 SP1P08047 785 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 NDUFB7P17568 137 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 FZD2Q14332 565 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 GSG1Q2KHT4 349 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 MRPS24Q96EL2 167 aaKnown RBP12.91□□□□□ -0.34
COL7A1-201ENST00000328333 ZC3HAV1LQ96H79 300 aaKnown RBP12.91□□□□□ -0.34
COL7A1-201ENST00000328333 TRAF4Q9BUZ4 470 aaPredicted RBP12.91□□□□□ -0.34
COL7A1-201ENST00000328333 TMEM167BQ9NRX6 74 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 HLA-GP17693 338 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 SLC25A1P53007 311 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 DHRS13Q6UX07 377 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 OR5C1Q8NGR4 320 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 RASL12Q9NYN1 266 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 MTFP1Q9UDX5 166 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 SNAI1O95863 264 aaPredicted RBP12.91□□□□□ -0.34
COL7A1-201ENST00000328333 CD38P28907 300 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 BRS3P32247 399 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 C19orf57Q0VDD7 668 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 PARS2Q7L3T8 475 aaKnown RBP12.91□□□□□ -0.34
COL7A1-201ENST00000328333 STXBP6Q8NFX7 210 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 OR1L4Q8NGR5 311 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 RSG1Q9BU20 258 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 C20orf27Q9GZN8 174 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 HAPLN2Q9GZV7 340 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 IL21Q9HBE4 155 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 IGSF23A1L1A6 192 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 H3BNC9 293 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 IQCF3P0C7M6 154 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 ZBTB25P24278 435 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 OR5M10Q6IEU7 315 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 TMEM25Q86YD3 366 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 PIGTQ969N2 578 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 MRGPRX4Q96LA9 322 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 PTPRFP10586 1907 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 HELTA6NFD8 242 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 PPP6CO00743 305 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 PTGESO14684 152 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 TNFRSF10CO14798 259 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 MRPS21P82921 87 aaKnown RBP12.91□□□□□ -0.34
COL7A1-201ENST00000328333 PFN3P60673 137 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 HTRA3P83110 453 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 WFIKKN1Q96NZ8 548 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 POM121BA6NF01 834 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 LIM2P55344 173 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 OR5M1Q8NGP8 315 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 FER1L6-AS2Q96M78 137 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 OR8B4Q96RC9 309 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 VCX2Q9H322 139 aa12.91□□□□□ -0.34
COL7A1-201ENST00000328333 HINT3Q9NQE9 182 aaKnown RBP12.91□□□□□ -0.34
COL7A1-201ENST00000328333 CDC14CA4D256 554 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 ZNF468Q5VIY5 522 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-201ENST00000328333 JMJD6Q6NYC1 403 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-201ENST00000328333 ARRDC3Q96B67 414 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 TRGV10A0A0A0MS01 117 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 ZNF25P17030 456 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-201ENST00000328333 CD22P20273 847 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 SULT1A1P50225 295 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 LINC00303Q3SY05 128 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 TAS1R1Q7RTX1 841 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 ZNF835Q9Y2P0 537 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 MFNGO00587 321 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 HLA-DRB3P79483 266 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 HYAL4Q2M3T9 481 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 ZNF766Q5HY98 468 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 MYPOPQ86VE0 399 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-201ENST00000328333 OSR2Q8N2R0 312 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 PERPQ96FX8 193 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 RALGAPA2Q2PPJ7 1873 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 MBLAC1A4D2B0 266 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-201ENST00000328333 FAM3AP98173 230 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 OR4B1Q8NGF8 309 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms