RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ALG1L2C9J202 215 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 ARG1P05089 322 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 NKAIN1Q4KMZ8 207 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 SPANXN5Q5MJ07 72 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 C9orf135Q5VTT2 229 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 SPSB1Q96BD6 273 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 ABCD4O14678 606 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 TGFBR3Q03167 851 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 FOXF1Q12946 379 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 OSR2Q8N2R0 312 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 MRGPRX1Q96LB2 322 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 MBP02144 154 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 H2BFSP57053 126 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 CATSPERDQ86XM0 798 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 OR4F5Q8NH21 305 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 OR4F4Q96R69 305 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 TXN2Q99757 166 aa17.24■□□□□ 0.35
USP48-201ENST00000308271 A0A1W2PPQ1 181 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 PGA3P0DJD8 388 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 SLC37A1P57057 533 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 ZNF528Q3MIS6 628 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 UNQ9370/PRO34162Q6UXP9 181 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 MSI2Q96DH6 328 aaKnown RBP17.23■□□□□ 0.35
USP48-201ENST00000308271 ADAT1Q9BUB4 502 aaKnown RBP17.23■□□□□ 0.35
USP48-201ENST00000308271 ERGP11308 486 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 ACAA2P42765 397 aaKnown RBP17.23■□□□□ 0.35
USP48-201ENST00000308271 NCMAPQ5T1S8 102 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 FAM109BQ6ICB4 259 aaPredicted RBP17.23■□□□□ 0.35
USP48-201ENST00000308271 FAM210BQ96KR6 192 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 NAA60Q9H7X0 242 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 LHX9Q9NQ69 397 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 ZMIZ1Q9ULJ6 1067 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 NOSIPQ9Y314 301 aaKnown RBP17.23■□□□□ 0.35
USP48-201ENST00000308271 HDGFL3Q9Y3E1 203 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 TIMM10BQ9Y5J6 103 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 SSTP61278 116 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 DMRTC1Q5HYR2 192 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 NAT6Q93015 286 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 BORCS7Q96B45 105 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 OR6C1Q96RD1 312 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 ACTR3CQ9C0K3 210 aaPredicted RBP17.23■□□□□ 0.35
USP48-201ENST00000308271 RYDENQ9NUL5 291 aaKnown RBP17.23■□□□□ 0.35
USP48-201ENST00000308271 VSIG4Q9Y279 399 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 DHHO43323 396 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 OR2J2O76002 312 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 CTSDP07339 412 aaPredicted RBP17.23■□□□□ 0.35
USP48-201ENST00000308271 NR0B2Q15466 257 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 OR2C3Q8N628 320 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 DMBX1Q8NFW5 382 aa17.23■□□□□ 0.35
USP48-201ENST00000308271 ELOA3CA0A087WX78 387 aaPredicted RBP17.22■□□□□ 0.35
USP48-201ENST00000308271 TRBV5-5A0A0J9YX44 114 aa17.22■□□□□ 0.35
USP48-201ENST00000308271 SULT1A1P50225 295 aa17.22■□□□□ 0.35
USP48-201ENST00000308271 OR1D5P58170 312 aa17.22■□□□□ 0.35
USP48-201ENST00000308271 LILRB1Q8NHL6 650 aaPredicted RBP17.22■□□□□ 0.35
USP48-201ENST00000308271 ATOH1Q92858 354 aaPredicted RBP17.22■□□□□ 0.35
USP48-201ENST00000308271 REEP6Q96HR9 211 aa17.22■□□□□ 0.35
USP48-201ENST00000308271 SOSTQ9BQB4 213 aa17.22■□□□□ 0.35
USP48-201ENST00000308271 BOKQ9UMX3 212 aaPredicted RBP17.22■□□□□ 0.35
USP48-201ENST00000308271 OSGIN2Q9Y236 505 aa17.22■□□□□ 0.35
USP48-201ENST00000308271 TRPM6Q9BX84 2022 aa17.22■□□□□ 0.35
USP48-201ENST00000308271 PLPP3O14495 311 aa17.22■□□□□ 0.35
USP48-201ENST00000308271 CD63P08962 238 aa17.22■□□□□ 0.35
USP48-201ENST00000308271 G3V3Y1 287 aa17.22■□□□□ 0.35
USP48-201ENST00000308271 CTGFP29279 349 aa17.22■□□□□ 0.35
USP48-201ENST00000308271 LHX6Q9UPM6 363 aa17.22■□□□□ 0.35
USP48-201ENST00000308271 ARGFXA6NJG6 315 aa17.21■□□□□ 0.35
USP48-201ENST00000308271 OR1N1Q8NGS0 311 aa17.21■□□□□ 0.35
USP48-201ENST00000308271 PINX1Q96BK5 328 aaKnown RBP17.21■□□□□ 0.35
USP48-201ENST00000308271 RIMS4Q9H426 269 aaPredicted RBP17.21■□□□□ 0.35
USP48-201ENST00000308271 DAOP14920 347 aa17.21■□□□□ 0.35
USP48-201ENST00000308271 CDAP32320 146 aa17.21■□□□□ 0.35
USP48-201ENST00000308271 OR3A4PP47883 348 aa17.21■□□□□ 0.35
USP48-201ENST00000308271 CCR5P51681 352 aa17.21■□□□□ 0.35
USP48-201ENST00000308271 ZP1P60852 638 aa17.21■□□□□ 0.35
USP48-201ENST00000308271 COL13A1Q5TAT6 717 aaPredicted RBP17.21■□□□□ 0.35
USP48-201ENST00000308271 RAB33BQ9H082 229 aa17.21■□□□□ 0.35
USP48-201ENST00000308271 CBY1Q9Y3M2 126 aa17.21■□□□□ 0.35
USP48-201ENST00000308271 A8MXK9 166 aa17.21■□□□□ 0.35
USP48-201ENST00000308271 CYR61O00622 381 aa17.21■□□□□ 0.35
USP48-201ENST00000308271 PIN1P1O15428 100 aa17.21■□□□□ 0.35
USP48-201ENST00000308271 RNF4P78317 190 aa17.21■□□□□ 0.35
USP48-201ENST00000308271 RBFOX3A6NFN3 312 aa17.21■□□□□ 0.34
USP48-201ENST00000308271 ANGPTL7O43827 346 aa17.21■□□□□ 0.34
USP48-201ENST00000308271 F12P00748 615 aaPredicted RBP17.21■□□□□ 0.34
USP48-201ENST00000308271 HOXC4P09017 264 aaPredicted RBP17.21■□□□□ 0.34
USP48-201ENST00000308271 CD27P26842 260 aa17.21■□□□□ 0.34
USP48-201ENST00000308271 CSNK1EP49674 416 aaKnown RBP17.21■□□□□ 0.34
USP48-201ENST00000308271 OR2AE1Q8NHA4 323 aa17.21■□□□□ 0.34
USP48-201ENST00000308271 FGF14Q92915 247 aa17.21■□□□□ 0.34
USP48-201ENST00000308271 HIPK2Q9H2X6 1198 aa17.21■□□□□ 0.34
USP48-201ENST00000308271 PSENENQ9NZ42 101 aa17.21■□□□□ 0.34
USP48-201ENST00000308271 AMDHD2Q9Y303 409 aa17.21■□□□□ 0.34
USP48-201ENST00000308271 GATCO43716 136 aaKnown RBP17.2■□□□□ 0.34
USP48-201ENST00000308271 MPZL1O95297 269 aa17.2■□□□□ 0.34
USP48-201ENST00000308271 GFERP55789 205 aa17.2■□□□□ 0.34
USP48-201ENST00000308271 CD226Q15762 336 aa17.2■□□□□ 0.34
USP48-201ENST00000308271 C22orf15Q8WYQ4 148 aa17.2■□□□□ 0.34
USP48-201ENST00000308271 PAPPA2Q9BXP8 1791 aa17.2■□□□□ 0.34
USP48-201ENST00000308271 DEGS1O15121 323 aa17.2■□□□□ 0.34
USP48-201ENST00000308271 SIGLEC5O15389 551 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms