RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PGA5P0DJD9 388 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 JUNBP17275 347 aaPredicted RBP12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 PKIAP61925 76 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 GAMTQ14353 236 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 SHBQ15464 509 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 BATF2Q8N1L9 274 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 CKAP5Q14008 2032 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 CA2P00918 260 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 MGPP08493 103 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 CDX1P47902 265 aaPredicted RBP12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 TMEM267Q0VDI3 215 aaPredicted RBP12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 STARD4Q96DR4 205 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 IFT172Q9UG01 1749 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 HIST1H1CP16403 213 aaKnown RBP12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 ID1P41134 155 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 MARCH1Q8TCQ1 289 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 GLI4P10075 376 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 MICBQ29980 383 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 HFEQ30201 348 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 GPRIN1Q7Z2K8 1008 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 ARRDC1Q8N5I2 433 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 GPA33Q99795 319 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 ANGPTL4Q9BY76 406 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 ZNF391Q9UJN7 358 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 K7ESF4 209 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 M0R296 226 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 LIPNQ5VXI9 398 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 ACSM5Q6NUN0 579 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 GLIPR2Q9H4G4 154 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 LOC107984156A0A0G2JMH3 177 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 SLCO2B1O94956 709 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 CD68P34810 354 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 BSGP35613 385 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 RRN3P1Q2M238 152 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 ARL17AQ8IVW1 177 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 OR8A1Q8NGG7 326 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 OR2T10Q8NGZ9 312 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 MASP2O00187 686 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 PRKRAO75569 313 aaKnown RBP12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 PSMB5P28074 263 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 SLC38A11Q08AI6 406 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 HLA-DRB5Q30154 266 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 CCDC190Q86UF4 302 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 BEND2Q8NDZ0 799 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 PP6455Q8WZ26 134 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 DPH3Q96FX2 82 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 IL17BQ9UHF5 180 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 BOLA1Q9Y3E2 137 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 ZNF324O75467 553 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 SLC48A1Q6P1K1 146 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 IFITM5A6NNB3 132 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 FAM157BP0CG42 384 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 ADAMTSL4Q6UY14 1074 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 ADPRHL1Q8NDY3 354 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 RPS4Y2Q8TD47 263 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 OR5M11Q96RB7 305 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 NPIPB6E9PJ23 425 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 OR2G2Q8NGZ5 317 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 IGKV6D-41A0A0C4DH26 115 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 OR5B21A6NL26 309 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 ALDOCP09972 364 aaKnown RBP12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 XKR7Q5GH72 579 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 ZBTB37Q5TC79 503 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 ZDHHC22Q8N966 263 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 ATOH1Q92858 354 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 PRO1933Q9H354 126 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 CLEC1BQ9P126 229 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 PSG11Q9UQ72 335 aa12.59□□□□□ -0.39
CCDC88A-201ENST00000263630 FZD9O00144 591 aa12.58□□□□□ -0.39
CCDC88A-201ENST00000263630 Q96M85 177 aa12.58□□□□□ -0.39
CCDC88A-201ENST00000263630 HINT1P49773 126 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 MNX1P50219 401 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 LBX1P52954 281 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 NUFIP2Q7Z417 695 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 RPS19BP1Q86WX3 136 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 PBOV1Q9GZY1 135 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 TREX1Q9NSU2 369 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 PIPOXQ9P0Z9 390 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 UNC13CQ8NB66 2214 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 DHRS3O75911 302 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 PIGAP37287 484 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 EVX2Q03828 476 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 SYT14P1Q58G82 188 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 PAQR6Q6TCH4 344 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 OR5M1Q8NGP8 315 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 GABRG3Q99928 467 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 CHST2Q9Y4C5 530 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 TIMP1P01033 207 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 ARSAP15289 507 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 SYT8Q8NBV8 401 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 APOBEC3DQ96AK3 386 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 FGF21Q9NSA1 209 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 A0A1B0GV72 72 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 IFITM10A6NMD0 228 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 M0R082 166 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 GFRA2O00451 464 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 GPANK1O95872 356 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 BRS3P32247 399 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 ZNF273Q14593 569 aa12.58□□□□□ -0.4
CCDC88A-201ENST00000263630 PELI3Q8N2H9 469 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms