RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 DECR2Q9NUI1 292 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 MSRB2Q9Y3D2 182 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 FREM3P0C091 2139 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 GLSO94925 669 aaPredicted RBP10.14□□□□□ -0.79
VPS4A-201ENST00000254950 CA6P23280 308 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 GFRA1P56159 465 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 SGPP2Q8IWX5 399 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 OR1K1Q8NGR3 316 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 OR13G1Q8NGZ3 307 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 UBE2J1Q9Y385 318 aaPredicted RBP10.14□□□□□ -0.79
VPS4A-201ENST00000254950 FXYD6-FXYD2A0A087WZ82 144 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 TMEM272A0A1B0GTI8 110 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 TMEM82A0PJX8 343 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 OR5B21A6NL26 309 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 LRRC30A6NM36 301 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 ZNF716A6NP11 495 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 H7C1Q1 480 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 RAC2P15153 192 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 CTSSP25774 331 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 PPA1Q15181 289 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 CMTM1Q8IZ96 169 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 FBXL14Q8N1E6 418 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 SLC25A21Q9BQT8 299 aaPredicted RBP10.14□□□□□ -0.79
VPS4A-201ENST00000254950 FXYD6Q9H0Q3 95 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 AUNIPQ9H7T9 357 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 FAM206AQ9NX38 181 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 GSKIPQ9P0R6 139 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 PIGBOS1A0A0B4J2F0 54 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 C16orf97H3BN30 126 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 TGM6O95932 706 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 FSTP19883 344 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 RAB6AP20340 208 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 ENDOGQ14249 297 aaKnown RBP10.13□□□□□ -0.79
VPS4A-201ENST00000254950 UNQ9370/PRO34162Q6UXP9 181 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 GDPD3Q7L5L3 318 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 BEST4Q8NFU0 473 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 PHB2Q99623 299 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 CHST5Q9GZS9 411 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 OPN3Q9H1Y3 402 aaPredicted RBP10.13□□□□□ -0.79
VPS4A-201ENST00000254950 CCR6P51684 374 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 FBXO17Q96EF6 278 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 MIXL1Q9H2W2 232 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 PIEZO1Q92508 2521 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 MPDZO75970 2070 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 AGFG2O95081 481 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 COX5BP10606 129 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 GNB3P16520 340 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 DNASE1P24855 282 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 OR3A4PP47883 348 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 KLRB1Q12918 225 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 C19orf48Q6RUI8 117 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 GABRG1Q8N1C3 465 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 INO80EQ8NBZ0 244 aaPredicted RBP10.13□□□□□ -0.79
VPS4A-201ENST00000254950 ZFAND1Q8TCF1 268 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 GCDHQ92947 438 aaPredicted RBP10.13□□□□□ -0.79
VPS4A-201ENST00000254950 SZT2Q5T011 3432 aa10.13□□□□□ -0.79
VPS4A-201ENST00000254950 CTAG2O75638 210 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 EDN3P14138 238 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 H3F3AP84243 136 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 SSBP1Q04837 148 aaKnown RBP10.12□□□□□ -0.79
VPS4A-201ENST00000254950 CELF2-AS1Q8N7Q2 184 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 ZNF610Q8N9Z0 462 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 CPEB3Q8NE35 698 aaKnown RBP10.12□□□□□ -0.79
VPS4A-201ENST00000254950 RDH5Q92781 318 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 BOD1Q96IK1 185 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 DDOQ99489 341 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 NXF2Q9GZY0 626 aaKnown RBP10.12□□□□□ -0.79
VPS4A-201ENST00000254950 WNT5BQ9H1J7 359 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 TMEM131Q92545 1883 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 KIR2DS1A0A191URI9 304 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 HMX3A6NHT5 357 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 SERPINE3A8MV23 424 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 CCL21O00585 134 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 TERTO14746 1132 aaKnown RBP10.12□□□□□ -0.79
VPS4A-201ENST00000254950 SH2D1BO14796 132 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 BET1O15155 118 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 GLRA1P23415 457 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 KIR2DS4P43632 304 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 IL13RA1P78552 427 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 KIR2DS1Q14954 304 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 Q6ZT83 130 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 FOXRED2Q8IWF2 684 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 ZNF431Q8TF32 576 aaPredicted RBP10.12□□□□□ -0.79
VPS4A-201ENST00000254950 G6PC2Q9NQR9 355 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 PMF1-BGLAPU3KQ54 211 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 TRBV5-7A0A0A0MS05 114 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 SLC22A5O76082 557 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 SFTPBP07988 381 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 B3GALT5-AS1P59052 145 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 S100A10P60903 97 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 OR8B8Q15620 311 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 TSC22D1Q15714 1073 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 PNLIPRP3Q17RR3 467 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 NRN1LQ496H8 165 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 TFAP2EQ6VUC0 442 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 CDH24Q86UP0 819 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 OR51S1Q8NGJ8 323 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 GIMAP1Q8WWP7 306 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 SGK3Q96BR1 496 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 GPR137Q96N19 417 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms