RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 EHFQ9NZC4 300 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 AJAP1Q9UKB5 411 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 ZNF835Q9Y2P0 537 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 H0YIG0 161 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 BET1O15155 118 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ALPLP05186 524 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 HLA-DQB2P05538 268 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 MELTFP08582 738 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 SLC35E2P0CK97 266 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 HIST1H1EP10412 219 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 PMCHP20382 165 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 MALP21145 153 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 IL1R2P27930 398 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 CCR5P51681 352 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 B2MP61769 119 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 EMX1Q04741 257 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 SPCS2Q15005 226 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 TMEM184AQ6ZMB5 413 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 LGI3Q8N145 548 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 C12orf29Q8N999 325 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 OR5AK3PQ8NH89 298 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 OR10J5Q8NHC4 309 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 SFT2D1Q8WV19 159 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 IGSF8Q969P0 613 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 FAM163AQ96GL9 167 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 SLC46A1Q96NT5 459 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 AQP10Q96PS8 301 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 VCX2Q9H322 139 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 SMDT1Q9H4I9 107 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 STRAPQ9Y3F4 350 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 NUMBLQ9Y6R0 609 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 JRKO75564 520 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 POP7O75817 140 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 C6orf47O95873 294 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 IQCF3P0C7M6 154 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 MMP11P24347 488 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 CD27P26842 260 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 UCP3P55916 312 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 P2RX3P56373 397 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 AANATQ16613 207 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 NHLRC3Q5JS37 347 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 FAM57BQ71RH2 274 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 FAM169BQ8N8A8 192 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 SLC25A40Q8TBP6 338 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 PHLDA1Q8WV24 401 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 TSLPQ969D9 159 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 TOMM40LQ969M1 308 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 SH3YL1Q96HL8 342 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 AKIP1Q9NQ31 210 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 GDF2Q9UK05 429 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 FAM208AQ9UK61 1670 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 MGAM2Q2M2H8 2515 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 LOC285556D6RIA3 1793 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 TRAV18A0A075B6X5 111 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 A0A1W2PQH9 124 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 PIRTP0C851 137 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 CSF2RBP32927 897 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 RPS18P62269 152 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 FZD2Q14332 565 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ST3GAL2Q16842 350 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 DACT2Q5SW24 774 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 PIANPQ8IYJ0 282 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ZNF740Q8NDX6 193 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 OR9Q2Q8NGE9 314 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 SYNPRQ8TBG9 265 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 CDS1Q92903 461 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ISG20Q96AZ6 181 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 MEGF10Q96KG7 1140 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 GPR137Q96N19 417 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ABHD1Q96SE0 405 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 NUDT22Q9BRQ3 303 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 DNMT3BQ9UBC3 853 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 RHCGQ9UBD6 479 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 MAFBQ9Y5Q3 323 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 MMP24Q9Y5R2 645 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ALKQ9UM73 1620 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 RBBP6Q7Z6E9 1792 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 CCL21O00585 134 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ACTL6AO96019 429 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 HOXB5P09067 269 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 FGF5P12034 268 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ARSBP15848 533 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 PDLIM4P50479 330 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 KCNQ1P51787 676 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 SPHARQ15513 63 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ECM1Q16610 540 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 SLC22A6Q4U2R8 563 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 FBXO48Q5FWF7 155 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 RNLSQ5VYX0 342 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 BPIFA4PQ86YQ2 179 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 OR8I2Q8N0Y5 310 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 TMEM123Q8N131 208 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 DUSP19Q8WTR2 217 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ELSPBP1Q96BH3 223 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 CMBLQ96DG6 245 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 WFIKKN1Q96NZ8 548 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 DUSP9Q99956 384 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 UBQLN3Q9H347 655 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 CISD1Q9NZ45 108 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 SOX21Q9Y651 276 aaPredicted RBP2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms