RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 RNF148Q8N7C7 305 aa12.23□□□□□ -0.45
SYNE2-228ENST00000639659 C8orf46Q8TAG6 207 aa12.23□□□□□ -0.45
SYNE2-228ENST00000639659 GNPDA2Q8TDQ7 276 aa12.23□□□□□ -0.45
SYNE2-228ENST00000639659 CFHR4Q92496 578 aa12.23□□□□□ -0.45
SYNE2-228ENST00000639659 C12orf43Q96C57 262 aaKnown RBP12.23□□□□□ -0.45
SYNE2-228ENST00000639659 DHRS1Q96LJ7 313 aa12.23□□□□□ -0.45
SYNE2-228ENST00000639659 FUZQ9BT04 418 aa12.23□□□□□ -0.45
SYNE2-228ENST00000639659 RTL8AQ9BWD3 113 aa12.23□□□□□ -0.45
SYNE2-228ENST00000639659 MMP28Q9H239 520 aa12.23□□□□□ -0.45
SYNE2-228ENST00000639659 RAB18Q9NP72 206 aa12.23□□□□□ -0.45
SYNE2-228ENST00000639659 M0R1W7 72 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 ZNF593O00488 134 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-228ENST00000639659 CHST1O43916 411 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 PEX14O75381 377 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 MPIG6BO95866 241 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 CD28P10747 220 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 COX7A1P24310 79 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 RRM2P31350 389 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 FMO3P31513 532 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 GSK3AP49840 483 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 GRB2P62993 217 aaKnown RBP12.22□□□□□ -0.45
SYNE2-228ENST00000639659 SLC37A3Q8NCC5 494 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 SPSB4Q96A44 273 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 PHF21AQ96BD5 680 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 SGK3Q96BR1 496 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 MED30Q96HR3 178 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 PGAM5Q96HS1 289 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 RAB3IPQ96QF0 476 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-228ENST00000639659 OR5M11Q96RB7 305 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 EFCAB1Q9HAE3 211 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 NOTCH3Q9UM47 2321 aa12.22□□□□□ -0.45
SYNE2-228ENST00000639659 hCG_38984A0A1B0GV85 526 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 DHRS12A0PJE2 317 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 ZNF850A8MQ14 1090 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 SLC15A1P46059 708 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 ZNF121P58317 390 aaPredicted RBP12.21□□□□□ -0.45
SYNE2-228ENST00000639659 PSME3P61289 254 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 IL5RAQ01344 420 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 PRDX4Q13162 271 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 ZNF788Q6ZQV5 615 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 LINC00471Q8N535 108 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 OR6N2Q8NGY6 317 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 MCUR1Q96AQ8 359 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 DMRTB1Q96MA1 342 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 OR10A2Q9H208 303 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 RANBP3Q9H6Z4 567 aaPredicted RBP12.21□□□□□ -0.45
SYNE2-228ENST00000639659 TBC1D23Q9NUY8 699 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 DCAF13Q9NV06 445 aaKnown RBP12.21□□□□□ -0.45
SYNE2-228ENST00000639659 NLKQ9UBE8 527 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 CDH10Q9Y6N8 788 aa12.21□□□□□ -0.45
SYNE2-228ENST00000639659 A0A1W2PRX2 142 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 NDUFAB1O14561 156 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 SLC22A2O15244 555 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 SIGLEC5O15389 551 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 CLUP10909 449 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 GLRA1P23415 457 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 GSSP48637 474 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 LGALS4P56470 323 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 TSPAN31Q12999 210 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 CRMP1Q14194 572 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 VAX1Q5SQQ9 334 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 ATPAF1Q5TC12 328 aaPredicted RBP12.2□□□□□ -0.46
SYNE2-228ENST00000639659 HCP5Q6MZN7 132 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 HDXQ7Z353 690 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 MKXQ8IYA7 352 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 FTMTQ8N4E7 242 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 ZNRF1Q8ND25 227 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 CSNK2A3Q8NEV1 391 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 OR4F17Q8NGA8 305 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 OR9Q2Q8NGE9 314 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 OR5D13Q8NGL4 314 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 PIGCQ92535 297 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 OTULINQ96BN8 352 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 RNF170Q96K19 258 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 OR4F4Q96R69 305 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 DNTTIP1Q9H147 329 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 SP140LQ9H930 580 aa12.2□□□□□ -0.46
SYNE2-228ENST00000639659 OR2AT4A6NND4 320 aa12.19□□□□□ -0.46
SYNE2-228ENST00000639659 FABP3P05413 133 aa12.19□□□□□ -0.46
SYNE2-228ENST00000639659 CD33P20138 364 aa12.19□□□□□ -0.46
SYNE2-228ENST00000639659 CFL1P23528 166 aaKnown RBP12.19□□□□□ -0.46
SYNE2-228ENST00000639659 MXRA7P84157 204 aa12.19□□□□□ -0.46
SYNE2-228ENST00000639659 EMX1Q04741 257 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-228ENST00000639659 KLHL12Q53G59 568 aa12.19□□□□□ -0.46
SYNE2-228ENST00000639659 FOXB2Q5VYV0 432 aa12.19□□□□□ -0.46
SYNE2-228ENST00000639659 C11orf87Q6NUJ2 197 aa12.19□□□□□ -0.46
SYNE2-228ENST00000639659 C8orf82Q6P1X6 216 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-228ENST00000639659 ERI1Q8IV48 349 aaKnown RBP12.19□□□□□ -0.46
SYNE2-228ENST00000639659 TIGD4Q8IY51 512 aa12.19□□□□□ -0.46
SYNE2-228ENST00000639659 OR8D4Q8NGM9 314 aa12.19□□□□□ -0.46
SYNE2-228ENST00000639659 OR10Z1Q8NGY1 313 aa12.19□□□□□ -0.46
SYNE2-228ENST00000639659 ANGPTL6Q8NI99 470 aa12.19□□□□□ -0.46
SYNE2-228ENST00000639659 PYURFQ96I23 114 aa12.19□□□□□ -0.46
SYNE2-228ENST00000639659 CITED2Q99967 270 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-228ENST00000639659 TLNRD1Q9H1K6 362 aa12.19□□□□□ -0.46
SYNE2-228ENST00000639659 KMT2CQ8NEZ4 4911 aaKnown RBP12.18□□□□□ -0.46
SYNE2-228ENST00000639659 TMEM210A6NLX4 147 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 ACAA1P09110 424 aaPredicted RBP12.18□□□□□ -0.46
SYNE2-228ENST00000639659 IGLL1P15814 213 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 SPI1P17947 270 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms