RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CASTOR2A6NHX0 329 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 RAMP2O60895 175 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 DDAH2O95865 285 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 APOA2P02652 100 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 CHRM2P08172 466 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 TMEM225BP0DP42 221 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 GABRA3P34903 492 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 PSMB10P40306 273 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 CSNK1A1P48729 337 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 ARRB1P49407 418 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-216ENST00000637968 TMEM33P57088 247 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 CSNK2A1P68400 391 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-216ENST00000637968 CDK5R1Q15078 307 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 MSMO1Q15800 293 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 CD300LDQ6UXZ3 194 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 SCD5Q86SK9 330 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 RTN4RL2Q86UN3 420 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 TMEM86AQ8N2M4 240 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 CYB561D1Q8N8Q1 229 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 CSNK2A3Q8NEV1 391 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 OR5B3Q8NH48 314 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 C11orf40Q8WZ69 217 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 LRRC3BQ96PB8 259 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 OR52D1Q9H346 318 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 ELL3Q9HB65 397 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-216ENST00000637968 GNG13Q9P2W3 67 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 RBPJLQ9UBG7 517 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 CACNG4Q9UBN1 327 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 OSGIN2Q9Y236 505 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 A0A0G2JK05 382 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 ZFP92A6NM28 416 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 SLC17A3O00476 420 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 LDB2O43679 373 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 GJB5O95377 273 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 IFNA5P01569 189 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 HSPB1P04792 205 aaKnown RBP5.15□□□□□ -1.59
SCN1A-216ENST00000637968 CSNK2A2P19784 350 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-216ENST00000637968 USF1P22415 310 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-216ENST00000637968 DNASE1L1P49184 302 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 THBS3P49746 956 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 LIM2P55344 173 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 TAS2R50P59544 299 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 INSM1Q01101 510 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-216ENST00000637968 DUSP5Q16690 384 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 BSXQ3C1V8 233 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 TMEM184AQ6ZMB5 413 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 MBOAT2Q6ZWT7 520 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 TGIF2LYQ8IUE0 185 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 SLC35F2Q8IXU6 374 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 STPG4Q8N801 248 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 OR51D1Q8NGF3 324 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 GLYATL1Q969I3 302 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 ANKRD9Q96BM1 317 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-216ENST00000637968 SMIM7Q9BQ49 75 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 SLC12A9Q9BXP2 914 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 NMNAT2Q9BZQ4 307 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 GTSF1LQ9H1H1 148 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 C1orf123Q9NWV4 160 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 KCNIP1Q9NZI2 227 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 KIAA1456Q9P272 454 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 FOXD3Q9UJU5 478 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-216ENST00000637968 YIPF1Q9Y548 306 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 CLDN5O00501 218 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 TOMM40O96008 361 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 TIA1P31483 386 aaKnown RBP eCLIP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 MESP2Q0VG99 397 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF154Q13106 437 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 MPPE1Q53F39 396 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 C12orf54Q6X4T0 127 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 CISD2Q8N5K1 135 aaKnown RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 ZFP62Q8NB50 900 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 ZNF563Q8TA94 476 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 PTPMT1Q8WUK0 201 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 TMEM170AQ8WVE7 144 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 SLC25A38Q96DW6 304 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 POM121L2Q96KW2 1035 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 LPAR4Q99677 370 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 ATG10Q9H0Y0 220 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 PARLQ9H300 379 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 MED20Q9H944 212 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 GPR35Q9HC97 309 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 NSG2Q9Y328 171 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 NUP188Q5SRE5 1749 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 A0A1W2PR48 441 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 WNT11O96014 354 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 DANCRP0C864 163 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 VASPP50552 380 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-216ENST00000637968 SGSHP51688 502 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 PNLIPRP1P54315 467 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 SCAND1P57086 179 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 FZD2Q14332 565 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 ODF1Q14990 250 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 Q499Y3 187 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 STUMQ69YW2 141 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 TMEM225Q6GV28 225 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 TUSC5Q8IXB3 177 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 OR5A2Q8NGI9 324 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 OR4K13Q8NH42 304 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 SCGB1C1Q8TD33 95 aa5.14□□□□□ -1.59
SCN1A-216ENST00000637968 FAM46BQ96A09 425 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms