RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PCDHGB1Q9Y5G3 927 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 A0A0A6YYJ9 748 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 DAPL1A0PJW8 107 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 TBX1O43435 398 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 IGHA1P01876 353 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 CFL1P23528 166 aaKnown RBP16.09■□□□□ 0.17
CLN3-260ENST00000637578 PAX2Q02962 417 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 EGR3Q06889 387 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 SCGB2A2Q13296 93 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 KLHL22Q53GT1 634 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 C6orf141Q5SZD1 244 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 ZNF684Q5T5D7 378 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 BPIFB6Q8NFQ5 453 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 OR11L1Q8NGX0 322 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 OR10A2Q9H208 303 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 NIPAL2Q9H841 368 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 FN3KRPQ9HA64 309 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 UFSP2Q9NUQ7 469 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 ZNF12P17014 697 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 RIDAP52758 137 aaKnown RBP16.09■□□□□ 0.17
CLN3-260ENST00000637578 TIGD6Q17RP2 521 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 ESCO2Q56NI9 601 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 NANPQ8TBE9 248 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 GGHQ92820 318 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 FGF20Q9NP95 211 aaPredicted RBP16.09■□□□□ 0.17
CLN3-260ENST00000637578 BRD7Q9NPI1 651 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 PLCXD1Q9NUJ7 323 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 RNF7Q9UBF6 113 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 PCDHGB5Q9Y5G0 923 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 INSIG2Q9Y5U4 225 aa16.09■□□□□ 0.17
CLN3-260ENST00000637578 ZNF254O75437 659 aa16.08■□□□□ 0.16
CLN3-260ENST00000637578 IRF2P14316 349 aa16.08■□□□□ 0.16
CLN3-260ENST00000637578 ADRA2CP18825 462 aa16.08■□□□□ 0.16
CLN3-260ENST00000637578 GSK3AP49840 483 aa16.08■□□□□ 0.16
CLN3-260ENST00000637578 PSMA6P60900 246 aaKnown RBP16.08■□□□□ 0.16
CLN3-260ENST00000637578 MZT1Q08AG7 82 aa16.08■□□□□ 0.16
CLN3-260ENST00000637578 ZNF154Q13106 437 aa16.08■□□□□ 0.16
CLN3-260ENST00000637578 OR8B8Q15620 311 aa16.08■□□□□ 0.16
CLN3-260ENST00000637578 PLEKHG7Q6ZR37 379 aa16.08■□□□□ 0.16
CLN3-260ENST00000637578 DVL3Q92997 716 aaPredicted RBP16.08■□□□□ 0.16
CLN3-260ENST00000637578 DACT3Q96B18 629 aaPredicted RBP16.08■□□□□ 0.16
CLN3-260ENST00000637578 C19orf24Q9BVV8 132 aa16.08■□□□□ 0.16
CLN3-260ENST00000637578 PSORS1C1Q9UIG5 152 aa16.08■□□□□ 0.16
CLN3-260ENST00000637578 ANKRD30BLA7E2S9 258 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 TNFRSF13BO14836 293 aaPredicted RBP16.07■□□□□ 0.16
CLN3-260ENST00000637578 KRT8P05787 483 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 RPS2P15880 293 aaKnown RBP16.07■□□□□ 0.16
CLN3-260ENST00000637578 EPHA1P21709 976 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 PSMB10P40306 273 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 DCDC5Q6ZRR9 648 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 USP43Q70EL4 1123 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 LHFPL3Q86UP9 236 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 YIPF7Q8N8F6 280 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 NEIL1Q96FI4 390 aaPredicted RBP16.07■□□□□ 0.16
CLN3-260ENST00000637578 PGAM5Q96HS1 289 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 ZNF649Q9BS31 505 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 SSBP3Q9BWW4 388 aaPredicted RBP16.07■□□□□ 0.16
CLN3-260ENST00000637578 Q9H521 79 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 OCEL1Q9H607 264 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 C14orf119Q9NWQ9 140 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 ERVK13-1Q9NX77 482 aa16.07■□□□□ 0.16
CLN3-260ENST00000637578 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP16.06■□□□□ 0.16
CLN3-260ENST00000637578 IRGMA1A4Y4 181 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 EFCAB10A6NFE3 127 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 METTL15A6NJ78 407 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 SLC1A7O00341 560 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 SULT1C4O75897 302 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 LHBP01229 141 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 PIPP12273 146 aaPredicted RBP16.06■□□□□ 0.16
CLN3-260ENST00000637578 DCKP27707 260 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 DCTDP32321 178 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 PAX8Q06710 450 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 MFGE8Q08431 387 aaPredicted RBP16.06■□□□□ 0.16
CLN3-260ENST00000637578 GALEQ14376 348 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 TUSC1Q2TAM9 212 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 TP53I3Q53FA7 332 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 ZNF841Q6ZN19 808 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 AHSA2Q719I0 299 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 KRT74Q7RTS7 529 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 C11orf53Q8IXP5 236 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 CSNK2A3Q8NEV1 391 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 SEMA6DQ8NFY4 1073 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 ALG8Q9BVK2 526 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 JAM3Q9BX67 310 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 INPP5EQ9NRR6 644 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 FAM206AQ9NX38 181 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 CNOT2Q9NZN8 540 aaKnown RBP16.06■□□□□ 0.16
CLN3-260ENST00000637578 ZNF391Q9UJN7 358 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 GNG8Q9UK08 70 aa16.06■□□□□ 0.16
CLN3-260ENST00000637578 ACOD1A6NK06 481 aa16.05■□□□□ 0.16
CLN3-260ENST00000637578 DENRO43583 198 aaKnown RBP16.05■□□□□ 0.16
CLN3-260ENST00000637578 SRSF10O75494 262 aaKnown RBP16.05■□□□□ 0.16
CLN3-260ENST00000637578 VENTXO95231 258 aa16.05■□□□□ 0.16
CLN3-260ENST00000637578 OR12D2P58182 307 aa16.05■□□□□ 0.16
CLN3-260ENST00000637578 HOXA4Q00056 320 aaPredicted RBP16.05■□□□□ 0.16
CLN3-260ENST00000637578 ST3GAL4Q11206 333 aa16.05■□□□□ 0.16
CLN3-260ENST00000637578 ZNF829Q3KNS6 432 aaPredicted RBP16.05■□□□□ 0.16
CLN3-260ENST00000637578 CDONQ4KMG0 1287 aa16.05■□□□□ 0.16
CLN3-260ENST00000637578 LYPD2Q6UXB3 125 aa16.05■□□□□ 0.16
CLN3-260ENST00000637578 WDR86Q86TI4 376 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms