RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 A0A0X1KG70 313 aa17.27■□□□□ 0.36
CLN3-250ENST00000636839 ZNF816-ZNF321PA0A0X1KG74 233 aa17.27■□□□□ 0.36
CLN3-250ENST00000636839 TMEM272A0A1B0GTI8 110 aa17.27■□□□□ 0.36
CLN3-250ENST00000636839 ICMTO60725 284 aa17.27■□□□□ 0.36
CLN3-250ENST00000636839 PRF1P14222 555 aa17.27■□□□□ 0.36
CLN3-250ENST00000636839 MPV17P39210 176 aa17.27■□□□□ 0.36
CLN3-250ENST00000636839 C16orf87Q6PH81 154 aa17.27■□□□□ 0.36
CLN3-250ENST00000636839 FAM169BQ8N8A8 192 aa17.27■□□□□ 0.36
CLN3-250ENST00000636839 OR4M2Q8NGB6 313 aa17.27■□□□□ 0.36
CLN3-250ENST00000636839 OR5L1Q8NGL2 311 aa17.27■□□□□ 0.36
CLN3-250ENST00000636839 SORCS2Q96PQ0 1159 aa17.27■□□□□ 0.36
CLN3-250ENST00000636839 PAPOLGQ9BWT3 736 aaKnown RBP17.27■□□□□ 0.36
CLN3-250ENST00000636839 ERCC1P07992 297 aaPredicted RBP17.26■□□□□ 0.35
CLN3-250ENST00000636839 ARSBP15848 533 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 CD40LGP29965 261 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 TLE1Q04724 770 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 DYNC1I2Q13409 638 aaKnown RBP17.26■□□□□ 0.35
CLN3-250ENST00000636839 GPER1Q99527 375 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 SRRQ9GZT4 340 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 MAGEB3O15480 346 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 APOA1P02647 267 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 MMP15P51511 669 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 IL18Q14116 193 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 BAK1Q16611 211 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 UBE2NLQ5JXB2 153 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 PLCXD3Q63HM9 321 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 WFDC8Q8IUA0 241 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 FAM46BQ96A09 425 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 FOXRED1Q96CU9 486 aaPredicted RBP17.26■□□□□ 0.35
CLN3-250ENST00000636839 WFIKKN1Q96NZ8 548 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 ABCB10Q9NRK6 738 aa17.26■□□□□ 0.35
CLN3-250ENST00000636839 LOC100289279A0A1B0GTE1 492 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 PLATP00750 562 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 ALDOBP05062 364 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 CHRNB4P30926 498 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 PSG7Q13046 419 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 PRDX4Q13162 271 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 MSMPQ1L6U9 139 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 FBXW12Q6X9E4 464 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 KLF14Q8TD94 323 aaPredicted RBP17.25■□□□□ 0.35
CLN3-250ENST00000636839 MARS2Q96GW9 593 aaKnown RBP17.25■□□□□ 0.35
CLN3-250ENST00000636839 ABHD1Q96SE0 405 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 UQCC2Q9BRT2 126 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 RHBDL2Q9NX52 303 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 MRPS7Q9Y2R9 242 aaKnown RBP17.25■□□□□ 0.35
CLN3-250ENST00000636839 A0A1W2PP11 408 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 MTCP1P56278 107 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 PYDC2Q56P42 97 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 AWAT2Q6E213 333 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 GLIPR1L1Q6UWM5 242 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 C1orf147Q96MC9 270 aaPredicted RBP17.25■□□□□ 0.35
CLN3-250ENST00000636839 KCNN3Q9UGI6 736 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 ADAM30Q9UKF2 790 aa17.25■□□□□ 0.35
CLN3-250ENST00000636839 MRPS28Q9Y2Q9 187 aaKnown RBP17.25■□□□□ 0.35
CLN3-250ENST00000636839 HIVEP3Q5T1R4 2406 aa17.24■□□□□ 0.35
CLN3-250ENST00000636839 LDLRAD4O15165 306 aa17.24■□□□□ 0.35
CLN3-250ENST00000636839 KDM4BO94953 1096 aa17.24■□□□□ 0.35
CLN3-250ENST00000636839 ALX3O95076 343 aa17.24■□□□□ 0.35
CLN3-250ENST00000636839 PTHLHP12272 177 aa17.24■□□□□ 0.35
CLN3-250ENST00000636839 FABP6P51161 128 aa17.24■□□□□ 0.35
CLN3-250ENST00000636839 ART1P52961 327 aa17.24■□□□□ 0.35
CLN3-250ENST00000636839 QRFPP83859 136 aa17.24■□□□□ 0.35
CLN3-250ENST00000636839 UNC119Q13432 240 aa17.24■□□□□ 0.35
CLN3-250ENST00000636839 HPSE2Q8WWQ2 592 aa17.24■□□□□ 0.35
CLN3-250ENST00000636839 ATP6V1G2-DDX39BF2Z307 99 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 VSIG8P0DPA2 414 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 CA6P23280 308 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 MTFR2Q6P444 385 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 TMEM104Q8NE00 496 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 OR10K1Q8NGX5 313 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 LILRB4Q8NHJ6 448 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 GCDHQ92947 438 aaPredicted RBP17.23■□□□□ 0.35
CLN3-250ENST00000636839 CYYR1Q96J86 154 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 COQ3Q9NZJ6 369 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 ETV7Q9Y603 341 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 SPRY1O43609 319 aaPredicted RBP17.23■□□□□ 0.35
CLN3-250ENST00000636839 ANGPTL7O43827 346 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 CDK2P24941 298 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 PTGFRP43088 359 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 RAD52P43351 418 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 ASCL1P50553 236 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 XKRXQ6PP77 449 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 OR8H2Q8N162 312 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 ABCG5Q9H222 651 aa17.23■□□□□ 0.35
CLN3-250ENST00000636839 ERRFI1Q9UJM3 462 aaPredicted RBP17.23■□□□□ 0.35
CLN3-250ENST00000636839 UPK1BO75841 260 aa17.22■□□□□ 0.35
CLN3-250ENST00000636839 CST4P01036 141 aa17.22■□□□□ 0.35
CLN3-250ENST00000636839 CD40P25942 277 aa17.22■□□□□ 0.35
CLN3-250ENST00000636839 TALDO1P37837 337 aa17.22■□□□□ 0.35
CLN3-250ENST00000636839 STEAP3Q658P3 488 aa17.22■□□□□ 0.35
CLN3-250ENST00000636839 TNFAIP8L1Q8WVP5 186 aa17.22■□□□□ 0.35
CLN3-250ENST00000636839 HAVCR1Q96D42 359 aa17.22■□□□□ 0.35
CLN3-250ENST00000636839 BANF2Q9H503 90 aa17.22■□□□□ 0.35
CLN3-250ENST00000636839 ING4Q9UNL4 249 aa17.22■□□□□ 0.35
CLN3-250ENST00000636839 DPRXA6NFQ7 191 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 J3QW42 95 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 TMEM127O75204 238 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 CTAG2O75638 210 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 PITPNBP48739 271 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 GPM6AP51674 278 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms