RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 CAPZBP47756 277 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 HNRNPA3P51991 378 aaKnown RBP6.1□□□□□ -1.43
SCN1A-213ENST00000636759 DEFB103AP81534 67 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 CDK3Q00526 305 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 MMDQ15546 238 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 C2orf76Q3KRA6 126 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 ALG10BQ5I7T1 473 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 AGBL4Q5VU57 503 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 ZNF880Q6PDB4 577 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 AGTRAPQ6RW13 159 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 CYB561D1Q8N8Q1 229 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 ADAD2Q8NCV1 583 aaKnown RBP6.1□□□□□ -1.43
SCN1A-213ENST00000636759 BHLHE23Q8NDY6 225 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 NOXO1Q8NFA2 376 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 FAM216AQ8WUB2 273 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 SCRT1Q9BWW7 348 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 ZBP1Q9H171 429 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 OR10A5Q9H207 317 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 ZNF107Q9UII5 783 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-213ENST00000636759 SLC7A7Q9UM01 511 aa6.1□□□□□ -1.43
SCN1A-213ENST00000636759 A0A1B0GW64 132 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 HSD17B6O14756 317 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 SLC16A5O15375 505 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 VAMP5O95183 116 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 LYL1P12980 280 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 EFNA3P52797 238 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 PNRC1Q12796 327 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-213ENST00000636759 TMEM128Q5BJH2 165 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 CST9LP1Q5W188 147 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 LILRA6Q6PI73 481 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 FAM180AQ6UWF9 173 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 TMEM182Q6ZP80 229 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-213ENST00000636759 EXD3Q8N9H8 876 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 OR6K6Q8NGW6 343 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 ADAMTS18Q8TE60 1221 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 TSEN15Q8WW01 171 aaKnown RBP6.09□□□□□ -1.43
SCN1A-213ENST00000636759 BCL2L2Q92843 193 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-213ENST00000636759 IL22RA2Q969J5 263 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 MRGPRX1Q96LB2 322 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 RNF208Q9H0X6 261 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 HIPK2Q9H2X6 1198 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 RBKSQ9H477 322 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 CDH20Q9HBT6 801 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 SLC2A4RGQ9NR83 387 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 PLA2G2EQ9NZK7 142 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 KCNK6Q9Y257 313 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 MRPS2Q9Y399 296 aaKnown RBP6.09□□□□□ -1.43
SCN1A-213ENST00000636759 LSM5Q9Y4Y9 91 aaKnown RBP6.09□□□□□ -1.43
SCN1A-213ENST00000636759 NUP210LQ5VU65 1888 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 LOC105371242A0A075B767 164 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 AHRRA9YTQ3 701 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 LEFTY1O75610 366 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 TIMP1P01033 207 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 CHRM2P08172 466 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 BMP5P22003 454 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 RAB28P51157 221 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 P2RY6Q15077 328 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 LCN10Q6JVE6 187 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 WDR73Q6P4I2 378 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 DPY19L2P2Q6ZN68 376 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 RFLNAQ6ZTI6 216 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 GDF7Q7Z4P5 450 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 MCEMP1Q8IX19 187 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 COX18Q8N8Q8 333 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 CHST4Q8NCG5 386 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 APCDD1LQ8NCL9 501 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 OR51A7Q8NH64 312 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 ZCCHC14Q8WYQ9 949 aaKnown RBP6.09□□□□□ -1.43
SCN1A-213ENST00000636759 BOD1Q96IK1 185 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 CST9LQ9H4G1 147 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 AURKAIP1Q9NWT8 199 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-213ENST00000636759 CHD7Q9P2D1 2997 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 CLEC4EQ9ULY5 219 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 LIPGQ9Y5X9 500 aa6.09□□□□□ -1.43
SCN1A-213ENST00000636759 FITM1A5D6W6 292 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 NPIPB15A6NHN6 443 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-213ENST00000636759 SLC16A8O95907 504 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 SCGB1D2O95969 90 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 SRP19P09132 144 aaKnown RBP6.08□□□□□ -1.44
SCN1A-213ENST00000636759 ZGLP1P0C6A0 271 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 TGM3Q08188 693 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 TMCO2Q7Z6W1 182 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-213ENST00000636759 OR51A2Q8NGJ7 313 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 MARCH1Q8TCQ1 289 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 FGF13Q92913 245 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 NKD1Q969G9 470 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 SCGB3A2Q96PL1 93 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 NMNAT2Q9BZQ4 307 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 BCL2L10Q9HD36 194 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 TMEM9BQ9NQ34 198 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 BET1LQ9NYM9 111 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 GTF2A1LQ9UNN4 478 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 HIF3AQ9Y2N7 669 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 C5orf42Q9H799 3197 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 CHD9Q3L8U1 2897 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 CATP04040 527 aaKnown RBP6.08□□□□□ -1.44
SCN1A-213ENST00000636759 MPC1LP0DKB6 136 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 RND2P52198 227 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 RND3P61587 244 aa6.08□□□□□ -1.44
SCN1A-213ENST00000636759 ARF6P62330 175 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms