RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 OR2G2Q8NGZ5 317 aa15.03■□□□□ -0
CLN3-247ENST00000636351 PIGCQ92535 297 aa15.03■□□□□ -0
CLN3-247ENST00000636351 GGHQ92820 318 aa15.03■□□□□ -0
CLN3-247ENST00000636351 CNBD2Q96M20 576 aa15.03■□□□□ -0
CLN3-247ENST00000636351 JAM3Q9BX67 310 aa15.03■□□□□ -0
CLN3-247ENST00000636351 NARFLQ9H6Q4 476 aa15.03■□□□□ -0
CLN3-247ENST00000636351 ISG20L2Q9H9L3 353 aaKnown RBP15.03■□□□□ -0
CLN3-247ENST00000636351 PLEKHA1Q9HB21 404 aa15.03■□□□□ -0
CLN3-247ENST00000636351 CNOT2Q9NZN8 540 aaKnown RBP15.03■□□□□ -0
CLN3-247ENST00000636351 PIGLQ9Y2B2 252 aa15.03■□□□□ -0
CLN3-247ENST00000636351 LOC107986453A0A1B0GWG9 222 aa15.02■□□□□ -0
CLN3-247ENST00000636351 A0A1B0GWJ7 208 aa15.02■□□□□ -0
CLN3-247ENST00000636351 A6NLC8 198 aa15.02■□□□□ -0
CLN3-247ENST00000636351 ZNF850A8MQ14 1090 aa15.02■□□□□ -0
CLN3-247ENST00000636351 SLC1A7O00341 560 aa15.02■□□□□ -0
CLN3-247ENST00000636351 SYT7O43581 403 aa15.02■□□□□ -0
CLN3-247ENST00000636351 IGLV3-1P01715 115 aa15.02■□□□□ -0
CLN3-247ENST00000636351 LIMS3P0CW19 117 aa15.02■□□□□ -0
CLN3-247ENST00000636351 LIMS4P0CW20 117 aa15.02■□□□□ -0
CLN3-247ENST00000636351 PIPP12273 146 aaPredicted RBP15.02■□□□□ -0
CLN3-247ENST00000636351 FAHP16930 419 aa15.02■□□□□ -0
CLN3-247ENST00000636351 CD200P41217 278 aa15.02■□□□□ -0
CLN3-247ENST00000636351 KIR3DL2P43630 455 aa15.02■□□□□ -0
CLN3-247ENST00000636351 CHN2P52757 468 aa15.02■□□□□ -0
CLN3-247ENST00000636351 TMEM33P57088 247 aa15.02■□□□□ -0
CLN3-247ENST00000636351 RIPPLY1Q0D2K3 151 aa15.02■□□□□ -0
CLN3-247ENST00000636351 ST3GAL4Q11206 333 aa15.02■□□□□ -0
CLN3-247ENST00000636351 HNRNPA0Q13151 305 aaKnown RBP15.02■□□□□ -0
CLN3-247ENST00000636351 PRDX4Q13162 271 aa15.02■□□□□ -0
CLN3-247ENST00000636351 C6orf141Q5SZD1 244 aa15.02■□□□□ -0
CLN3-247ENST00000636351 PRAMEF6Q5VXH4 476 aa15.02■□□□□ -0
CLN3-247ENST00000636351 DOK3Q7L591 496 aa15.02■□□□□ -0
CLN3-247ENST00000636351 PEG10Q86TG7 708 aaKnown RBP15.02■□□□□ -0
CLN3-247ENST00000636351 PRSS35Q8N3Z0 413 aa15.02■□□□□ -0
CLN3-247ENST00000636351 SPERTQ8NA61 448 aa15.02■□□□□ -0
CLN3-247ENST00000636351 C1orf159Q96HA4 380 aa15.02■□□□□ -0
CLN3-247ENST00000636351 MICU1Q9BPX6 476 aa15.02■□□□□ -0
CLN3-247ENST00000636351 ABCB9Q9NP78 766 aa15.02■□□□□ -0
CLN3-247ENST00000636351 TMEM106BQ9NUM4 274 aa15.02■□□□□ -0
CLN3-247ENST00000636351 UFSP2Q9NUQ7 469 aa15.02■□□□□ -0
CLN3-247ENST00000636351 C14orf119Q9NWQ9 140 aa15.02■□□□□ -0
CLN3-247ENST00000636351 SCN3BQ9NY72 215 aa15.02■□□□□ -0
CLN3-247ENST00000636351 PSORS1C1Q9UIG5 152 aa15.02■□□□□ -0
CLN3-247ENST00000636351 ENPP5Q9UJA9 477 aa15.02■□□□□ -0
CLN3-247ENST00000636351 RAB26Q9ULW5 256 aa15.02■□□□□ -0
CLN3-247ENST00000636351 ISPDA4D126 451 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 IRF2P14316 349 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 CSNK2BP67870 215 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 MVKQ03426 396 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 MRPL28Q13084 256 aaKnown RBP15.01□□□□□ -0.01
CLN3-247ENST00000636351 KCTD8Q6ZWB6 473 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 ZDHHC23Q8IYP9 409 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 ZNF420Q8TAQ5 688 aaPredicted RBP15.01□□□□□ -0.01
CLN3-247ENST00000636351 HIST1H2AAQ96QV6 131 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 ZNF184Q99676 751 aaPredicted RBP15.01□□□□□ -0.01
CLN3-247ENST00000636351 ZNF649Q9BS31 505 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 RTL8AQ9BWD3 113 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 Q9H521 79 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 FN3KRPQ9HA64 309 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 GCM1Q9NP62 436 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 PLCXD1Q9NUJ7 323 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 DCAF16Q9NXF7 216 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 CAB39Q9Y376 341 aaPredicted RBP15.01□□□□□ -0.01
CLN3-247ENST00000636351 MPC1Q9Y5U8 109 aa15.01□□□□□ -0.01
CLN3-247ENST00000636351 A0A1B0GTI1 187 aa15□□□□□ -0.01
CLN3-247ENST00000636351 LRRC30A6NM36 301 aa15□□□□□ -0.01
CLN3-247ENST00000636351 MYL12BO14950 172 aa15□□□□□ -0.01
CLN3-247ENST00000636351 TCF21O43680 179 aa15□□□□□ -0.01
CLN3-247ENST00000636351 CST4P01036 141 aa15□□□□□ -0.01
CLN3-247ENST00000636351 GRPP07492 148 aa15□□□□□ -0.01
CLN3-247ENST00000636351 SRP14P37108 136 aaKnown RBP15□□□□□ -0.01
CLN3-247ENST00000636351 NANOS3P60323 173 aaKnown RBP15□□□□□ -0.01
CLN3-247ENST00000636351 MAB21L1Q13394 359 aa15□□□□□ -0.01
CLN3-247ENST00000636351 ALKBH1Q13686 389 aaKnown RBP15□□□□□ -0.01
CLN3-247ENST00000636351 OR2G6Q5TZ20 316 aa15□□□□□ -0.01
CLN3-247ENST00000636351 PLCXD3Q63HM9 321 aa15□□□□□ -0.01
CLN3-247ENST00000636351 CELF2-AS1Q8N7Q2 184 aa15□□□□□ -0.01
CLN3-247ENST00000636351 ZNF676Q8N7Q3 588 aa15□□□□□ -0.01
CLN3-247ENST00000636351 LINC01356Q8N9X3 169 aa15□□□□□ -0.01
CLN3-247ENST00000636351 OR11L1Q8NGX0 322 aa15□□□□□ -0.01
CLN3-247ENST00000636351 HPS1Q92902 700 aa15□□□□□ -0.01
CLN3-247ENST00000636351 RAB1CQ92928 201 aa15□□□□□ -0.01
CLN3-247ENST00000636351 PPP1R3EQ9H7J1 279 aa15□□□□□ -0.01
CLN3-247ENST00000636351 FRRS1LQ9P0K9 344 aa15□□□□□ -0.01
CLN3-247ENST00000636351 CLEC2DQ9UHP7 191 aa15□□□□□ -0.01
CLN3-247ENST00000636351 WIPI2Q9Y4P8 454 aa15□□□□□ -0.01
CLN3-247ENST00000636351 TANC2Q9HCD6 1990 aa15□□□□□ -0.01
CLN3-247ENST00000636351 DYSFO75923 2080 aa14.99□□□□□ -0.01
CLN3-247ENST00000636351 hCG_1807616A0A1W2PRN6 198 aa14.99□□□□□ -0.01
CLN3-247ENST00000636351 PTGES3LE9PB15 166 aa14.99□□□□□ -0.01
CLN3-247ENST00000636351 IFNL4K9M1U5 179 aa14.99□□□□□ -0.01
CLN3-247ENST00000636351 CCDC159P0C7I6 412 aa14.99□□□□□ -0.01
CLN3-247ENST00000636351 CCL1P22362 96 aa14.99□□□□□ -0.01
CLN3-247ENST00000636351 RBMXP38159 391 aaKnown RBP14.99□□□□□ -0.01
CLN3-247ENST00000636351 CEP78Q5JTW2 689 aa14.99□□□□□ -0.01
CLN3-247ENST00000636351 ZBTB37Q5TC79 503 aa14.99□□□□□ -0.01
CLN3-247ENST00000636351 TMEM244Q5VVB8 128 aa14.99□□□□□ -0.01
CLN3-247ENST00000636351 FDX2Q6P4F2 183 aa14.99□□□□□ -0.01
CLN3-247ENST00000636351 MOB3CQ70IA8 216 aa14.99□□□□□ -0.01
CLN3-247ENST00000636351 RDH10Q8IZV5 341 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms