RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 CMTM4Q8IZR5 234 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 KIR3DL3Q8N743 410 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 SCCPDHQ8NBX0 429 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 LY6G5BQ8NDX9 201 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 OR6N2Q8NGY6 317 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 TEX47Q8TBZ9 253 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 LRTOMTQ8WZ04 291 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 ST8SIA4Q92187 359 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 ITFG2Q969R8 447 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 LRGUKQ96M69 825 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 CITED1Q99966 193 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 ABHD6Q9BV23 337 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 VCX3AQ9NNX9 186 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 ARMC1Q9NVT9 282 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 ZNF391Q9UJN7 358 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 N6AMT1Q9Y5N5 214 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 MPC1Q9Y5U8 109 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 ARRDC5A6NEK1 342 aa15.2■□□□□ 0.02
CLN3-241ENST00000635861 ANXA2P2A6NMY6 339 aa15.2■□□□□ 0.02
CLN3-241ENST00000635861 GLCEO94923 617 aa15.2■□□□□ 0.02
CLN3-241ENST00000635861 SOX14O95416 240 aa15.2■□□□□ 0.02
CLN3-241ENST00000635861 CLUP10909 449 aa15.2■□□□□ 0.02
CLN3-241ENST00000635861 PAICSP22234 425 aaKnown RBP15.2■□□□□ 0.02
CLN3-241ENST00000635861 ARF6P62330 175 aa15.2■□□□□ 0.02
CLN3-241ENST00000635861 RELBQ01201 579 aa15.2■□□□□ 0.02
CLN3-241ENST00000635861 ATPAF1Q5TC12 328 aaPredicted RBP15.2■□□□□ 0.02
CLN3-241ENST00000635861 WDR86Q86TI4 376 aa15.2■□□□□ 0.02
CLN3-241ENST00000635861 ERI1Q8IV48 349 aaKnown RBP15.2■□□□□ 0.02
CLN3-241ENST00000635861 GALNT4Q8N4A0 578 aa15.2■□□□□ 0.02
CLN3-241ENST00000635861 OR10Z1Q8NGY1 313 aa15.2■□□□□ 0.02
CLN3-241ENST00000635861 TAF15Q92804 592 aaKnown RBP eCLIP15.2■□□□□ 0.02
CLN3-241ENST00000635861 MICU1Q9BPX6 476 aa15.2■□□□□ 0.02
CLN3-241ENST00000635861 DPAGT1Q9H3H5 408 aa15.2■□□□□ 0.02
CLN3-241ENST00000635861 TMEM210A6NLX4 147 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 TIMM23O14925 209 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 FCN3O75636 299 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 GSTT1P30711 240 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 OPRL1P41146 370 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 IER3P46695 156 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 GSK3AP49840 483 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 ZNF121P58317 390 aaPredicted RBP15.19■□□□□ 0.02
CLN3-241ENST00000635861 GUCA2AQ02747 115 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 WDR38Q5JTN6 314 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 GDPGP1Q6ZNW5 385 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 FAM57BQ71RH2 274 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 OR10G2Q8NGC3 310 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 RTL8AQ9BWD3 113 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 PAPOLGQ9BWT3 736 aaKnown RBP15.19■□□□□ 0.02
CLN3-241ENST00000635861 S100A14Q9HCY8 104 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 TNFRSF19Q9NS68 423 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 U3KQV3 271 aa15.19■□□□□ 0.02
CLN3-241ENST00000635861 IGHV3OR15-7A0A075B7D8 119 aa15.18■□□□□ 0.02
CLN3-241ENST00000635861 NDUFB3O43676 98 aa15.18■□□□□ 0.02
CLN3-241ENST00000635861 H2BFMP0C1H6 154 aa15.18■□□□□ 0.02
CLN3-241ENST00000635861 HOXB6P17509 224 aaKnown RBP15.18■□□□□ 0.02
CLN3-241ENST00000635861 PPP1R8Q12972 351 aaKnown RBP15.18■□□□□ 0.02
CLN3-241ENST00000635861 MED21Q13503 144 aa15.18■□□□□ 0.02
CLN3-241ENST00000635861 KLHL12Q53G59 568 aa15.18■□□□□ 0.02
CLN3-241ENST00000635861 LRRC10Q5BKY1 277 aa15.18■□□□□ 0.02
CLN3-241ENST00000635861 BRICD5Q6PL45 260 aa15.18■□□□□ 0.02
CLN3-241ENST00000635861 VMO1Q7Z5L0 202 aa15.18■□□□□ 0.02
CLN3-241ENST00000635861 TIGD4Q8IY51 512 aa15.18■□□□□ 0.02
CLN3-241ENST00000635861 ZNF454Q8N9F8 522 aa15.18■□□□□ 0.02
CLN3-241ENST00000635861 C8orf46Q8TAG6 207 aa15.18■□□□□ 0.02
CLN3-241ENST00000635861 ITPKCQ96DU7 683 aa15.18■□□□□ 0.02
CLN3-241ENST00000635861 DUS3LQ96G46 650 aaKnown RBP15.18■□□□□ 0.02
CLN3-241ENST00000635861 PGAM5Q96HS1 289 aa15.18■□□□□ 0.02
CLN3-241ENST00000635861 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.17■□□□□ 0.02
CLN3-241ENST00000635861 M0QZ24 198 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 GPR137BO60478 399 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 CLPXO76031 633 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 FBP1P09467 338 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 RAP2AP10114 183 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 TGM4P49221 684 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 PDLIM3Q53GG5 364 aaPredicted RBP15.17■□□□□ 0.02
CLN3-241ENST00000635861 STUMQ69YW2 141 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 SPATA24Q86W54 205 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.17■□□□□ 0.02
CLN3-241ENST00000635861 ADGRG5Q8IZF4 528 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 OTOSQ8NHW6 89 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 CCL13Q99616 98 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 NIPAL2Q9H841 368 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 VNN3Q9NY84 501 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 DNAJC27Q9NZQ0 273 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 FAM96BQ9Y3D0 163 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 RHBDD3Q9Y3P4 386 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 RNF114Q9Y508 228 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 A0A0U1RQK1 487 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 H3BN98 237 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 CDIPTO14735 213 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 PRODHO43272 600 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 CST4P01036 141 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 LYNP07948 512 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 CSNK2BP67870 215 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 DEFA6Q01524 100 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 FAM76BQ5HYJ3 339 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 C1orf122Q6ZSJ8 110 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 GIPC3Q8TF64 312 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 CANT1Q8WVQ1 401 aa15.17■□□□□ 0.02
CLN3-241ENST00000635861 NIPSNAP1Q9BPW8 284 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms