RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 GPM6AP51674 278 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 CAMK2BQ13554 666 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 UNQ6126/PRO20091Q6UXV3 157 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 LRRTM1Q86UE6 522 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 OR4S1Q8NGB4 309 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 TMEM54Q969K7 222 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 OPN3Q9H1Y3 402 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-213ENST00000620219 ELF5Q9UKW6 265 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-213ENST00000620219 WDFY3Q8IZQ1 3526 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 TRAPPC2LH3BP13 241 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 FXYD4P59646 89 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 POU4F3Q15319 338 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 HAGHLQ6PII5 290 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-213ENST00000620219 FAM214BQ7L5A3 538 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 TMEM17Q86X19 198 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 OR56B1Q8NGI3 324 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 BCL2L14Q9BZR8 327 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 RAXQ9Y2V3 346 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 HSPA12AO43301 675 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 CSF1P09603 554 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 ANXA7P20073 488 aaKnown RBP13.74□□□□□ -0.21
CPSF1-213ENST00000620219 P2RY4P51582 365 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 MRPS10P82664 201 aaKnown RBP13.74□□□□□ -0.21
CPSF1-213ENST00000620219 NHLH1Q02575 133 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 MAB21L1Q13394 359 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 OR2A2Q6IF42 318 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 MDP1Q86V88 176 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 SPACA3Q8IXA5 215 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 OR51S1Q8NGJ8 323 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 RNASE11Q8TAA1 199 aaKnown RBP13.74□□□□□ -0.21
CPSF1-213ENST00000620219 ACKR4Q9NPB9 350 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 ZNF319Q9P2F9 582 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 XRCC2O43543 280 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 CTAG2O75638 210 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 CD3DP04234 171 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 MGMTP16455 207 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 CXorf67Q86X51 503 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-213ENST00000620219 OR5H2Q8NGV7 314 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 FGFBP3Q8TAT2 258 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 APOBEC3DQ96AK3 386 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-213ENST00000620219 CREB3L1Q96BA8 519 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 WDYHV1Q96HA8 205 aa13.74□□□□□ -0.21
CPSF1-213ENST00000620219 HMX3A6NHT5 357 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 LRRC37A5PQ49AS3 106 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 SPIN3Q5JUX0 258 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 STEAP1BQ6NZ63 245 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 WFDC8Q8IUA0 241 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 ZNF611Q8N823 705 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 ZBTB8BQ8NAP8 495 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-213ENST00000620219 SGK3Q96BR1 496 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 GMPPAQ96IJ6 420 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-213ENST00000620219 OR51J1Q9H342 316 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 HRASLSQ9HDD0 168 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 KNG1P01042 644 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 MMP15P51511 669 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 ZNF92Q03936 586 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 IKZF1Q13422 519 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 CCDC92Q53HC0 331 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-213ENST00000620219 C10orf128Q5T292 105 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 VWA1Q6PCB0 445 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 SH2D2AQ9NP31 389 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 PMP2P02689 132 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 ALDOBP05062 364 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 CA6P23280 308 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 OPRM1P35372 400 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 AP2S1P53680 142 aaPredicted RBP13.73□□□□□ -0.21
CPSF1-213ENST00000620219 CLVS2Q5SYC1 327 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 IDO2Q6ZQW0 420 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 FJX1Q86VR8 437 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 PP6455Q8WZ26 134 aa13.73□□□□□ -0.21
CPSF1-213ENST00000620219 C13orf42A0A1B0GVH6 325 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 XRCC3O43542 346 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 PSMB1P20618 241 aaKnown RBP13.72□□□□□ -0.21
CPSF1-213ENST00000620219 STEAP2Q8NFT2 490 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 CMSS1Q9BQ75 279 aaKnown RBP13.72□□□□□ -0.21
CPSF1-213ENST00000620219 PLSCR5A0PG75 271 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 C5orf63A6NC05 138 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 ZNF732B4DXR9 585 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 CPT2P23786 658 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 GSK3AP49840 483 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 OR52W1Q6IF63 320 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 FOXRED2Q8IWF2 684 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 TMEM246Q9BRR3 403 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 FAM117AQ9C073 453 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 WNT5BQ9H1J7 359 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 LHX6Q9UPM6 363 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 STARD10Q9Y365 291 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 A0A0A6YYJ9 748 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 ZNF816-ZNF321PA0A0X1KG74 233 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 C5orf51A6NDU8 294 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 NGFP01138 241 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 THBS4P35443 961 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 HLA-DQB1P01920 261 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 PTGFRP43088 359 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 SEC61A1P61619 476 aaKnown RBP13.72□□□□□ -0.21
CPSF1-213ENST00000620219 RIPPLY2Q5TAB7 128 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 C20orf85Q9H1P6 137 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 COMMD9Q9P000 198 aa13.72□□□□□ -0.21
CPSF1-213ENST00000620219 TEX13DA0A0J9YY54 714 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-213ENST00000620219 SDCBPO00560 298 aaPredicted RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms