RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 BPIFB2Q8N4F0 458 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 SEMA6DQ8NFY4 1073 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 OR13C8Q8NGS7 320 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 TNFAIP8L1Q8WVP5 186 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 PP6455Q8WZ26 134 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 HAS2Q92819 552 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 MRGPRFQ96AM1 343 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 MED30Q96HR3 178 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 EXO5Q9H790 373 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 PIPOXQ9P0Z9 390 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 SPRR3Q9UBC9 169 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 MCTS1Q9ULC4 181 aaKnown RBP12.59□□□□□ -0.39
VRK3-217ENST00000599538 PTPRBP23467 1997 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 IGKV1-27A0A075B6S5 117 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 OR14I1A6ND48 311 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 HLA-HP01893 362 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 CCL2P13500 99 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 EDN3P14138 238 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 SERPINA2P20848 420 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 CCL11P51671 97 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 ZNF92Q03936 586 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 MUC20Q8N307 709 aaPredicted RBP12.59□□□□□ -0.39
VRK3-217ENST00000599538 FDCSPQ8NFU4 85 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 OR2T35Q8NGX2 323 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 ZNF431Q8TF32 576 aaPredicted RBP12.59□□□□□ -0.39
VRK3-217ENST00000599538 RAB3CQ96E17 227 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 ARHGAP5-AS1Q96IT6 56 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 FAM210AQ96ND0 272 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 POFUT1Q9H488 388 aa12.59□□□□□ -0.39
VRK3-217ENST00000599538 BOD1L1Q8NFC6 3051 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 LOC100509620A0A075B734 347 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 ZNF780AO75290 641 aaPredicted RBP12.58□□□□□ -0.4
VRK3-217ENST00000599538 SIX6O95475 246 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 FAM109AQ8N4B1 249 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 PRSS33Q8NF86 280 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 SNAPC3Q92966 411 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 LINC00470Q9BZP3 86 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 BCO1Q9HAY6 547 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 ACKR4Q9NPB9 350 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 ARHGAP21Q5T5U3 1957 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 SNRPGP15A8MWD9 76 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 ANGPTL7O43827 346 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 PLATP00750 562 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 CHRM2P08172 466 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 CPN1P15169 458 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 HIST1H1DP16402 221 aaKnown RBP12.58□□□□□ -0.4
VRK3-217ENST00000599538 MGMTP16455 207 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 HRH1P35367 487 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 TMED4Q7Z7H5 227 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 PNLDC1Q8NA58 520 aaKnown RBP12.58□□□□□ -0.4
VRK3-217ENST00000599538 UXS1Q8NBZ7 420 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 SLA2Q9H6Q3 261 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 LDAHQ9H6V9 325 aa12.58□□□□□ -0.4
VRK3-217ENST00000599538 RANBP3Q9H6Z4 567 aaPredicted RBP12.58□□□□□ -0.4
VRK3-217ENST00000599538 GPN1Q9HCN4 374 aaPredicted RBP12.58□□□□□ -0.4
VRK3-217ENST00000599538 TNRC6AQ8NDV7 1962 aaKnown RBP12.57□□□□□ -0.4
VRK3-217ENST00000599538 MED12LQ86YW9 2145 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 FAM230AA0A1W2PPH8 454 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 ALX3O95076 343 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 FARS2O95363 451 aaKnown RBP12.57□□□□□ -0.4
VRK3-217ENST00000599538 LIPCP11150 499 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 DNASE1P24855 282 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 CD82P27701 267 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 TNFSF10P50591 281 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 PCBD1P61457 104 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 RPS27AP62979 156 aaKnown RBP12.57□□□□□ -0.4
VRK3-217ENST00000599538 FAM3AP98173 230 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 ATPAF1Q5TC12 328 aaPredicted RBP12.57□□□□□ -0.4
VRK3-217ENST00000599538 OR51T1Q8NGJ9 327 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 WDYHV1Q96HA8 205 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 ELL3Q9HB65 397 aaPredicted RBP12.57□□□□□ -0.4
VRK3-217ENST00000599538 ZNF581Q9P0T4 197 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 PRSS50Q9UI38 385 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 SCP2D1Q9UJQ7 156 aa12.57□□□□□ -0.4
VRK3-217ENST00000599538 MUC6Q6W4X9 2439 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 hCG_38984A0A1B0GV85 526 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 TMEM82A0PJX8 343 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 FOXI3A8MTJ6 420 aaPredicted RBP12.56□□□□□ -0.4
VRK3-217ENST00000599538 MFNGO00587 321 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 SPRY1O43609 319 aaPredicted RBP12.56□□□□□ -0.4
VRK3-217ENST00000599538 TSC22D2O75157 780 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 ALDH3B1P43353 468 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 GSK3AP49840 483 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 MTCP1P56278 107 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 H2BFSP57053 126 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 SOX8P57073 446 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 CXADRP78310 365 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 RIPPLY1Q0D2K3 151 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 RNASE10Q5GAN6 216 aaKnown RBP12.56□□□□□ -0.4
VRK3-217ENST00000599538 FAM89BQ8N5H3 189 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 NAXEQ8NCW5 288 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 APH1AQ96BI3 265 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 C10orf35Q96D05 121 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 NUDT16L1Q9BRJ7 211 aaKnown RBP12.56□□□□□ -0.4
VRK3-217ENST00000599538 C12orf49Q9H741 205 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 IFT46Q9NQC8 304 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 PARPBPQ9NWS1 579 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 SLC23A1Q9UHI7 598 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 VSIG4Q9Y279 399 aa12.56□□□□□ -0.4
VRK3-217ENST00000599538 AKAP13Q12802 2813 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms