RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 ERI1Q8IV48 349 aaKnown RBP12.15□□□□□ -0.46
PNKP-202ENST00000593706 CPOQ8IVL8 374 aa12.15□□□□□ -0.46
PNKP-202ENST00000593706 CMTM4Q8IZR5 234 aa12.15□□□□□ -0.46
PNKP-202ENST00000593706 BBS1Q8NFJ9 593 aa12.15□□□□□ -0.46
PNKP-202ENST00000593706 ZNF556Q9HAH1 456 aa12.15□□□□□ -0.46
PNKP-202ENST00000593706 PAPOLBQ9NRJ5 636 aaKnown RBP12.15□□□□□ -0.46
PNKP-202ENST00000593706 RPUSD1Q9UJJ7 312 aaKnown RBP12.15□□□□□ -0.46
PNKP-202ENST00000593706 KLHDC2Q9Y2U9 406 aa12.15□□□□□ -0.46
PNKP-202ENST00000593706 KPTNQ9Y664 436 aa12.15□□□□□ -0.46
PNKP-202ENST00000593706 ANKRD30BLA7E2S9 258 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 PRR23D1E9PI22 279 aaPredicted RBP12.14□□□□□ -0.47
PNKP-202ENST00000593706 SELENOFO60613 162 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 HMGN1P05114 100 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 PRR23D2P0DMB1 279 aaPredicted RBP12.14□□□□□ -0.47
PNKP-202ENST00000593706 PAICSP22234 425 aaKnown RBP12.14□□□□□ -0.47
PNKP-202ENST00000593706 RASSF2P50749 326 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 PRKXP51817 358 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 GRB2P62993 217 aaKnown RBP12.14□□□□□ -0.47
PNKP-202ENST00000593706 EIF2B1Q14232 305 aaKnown RBP12.14□□□□□ -0.47
PNKP-202ENST00000593706 MICBQ29980 383 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 C2orf68Q2NKX9 166 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 C11orf91Q3C1V1 193 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 ASRGL1Q7L266 308 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 PIP4P2Q8N4L2 257 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 OR6N2Q8NGY6 317 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 OTOSQ8NHW6 89 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 FAM110DQ8TAY7 271 aaPredicted RBP12.14□□□□□ -0.47
PNKP-202ENST00000593706 LRRC29Q8WV35 223 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 GABARAPL1Q9H0R8 117 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 OR51V1Q9H2C8 321 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 SEMA6AQ9H2E6 1030 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 CNTD2Q9H8S5 307 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 CENPMQ9NSP4 180 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 KAAG1Q9UBP8 84 aa12.14□□□□□ -0.47
PNKP-202ENST00000593706 CCDC182A6NF36 153 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 TBX1O43435 398 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 XRCC2O43543 280 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 FCN3O75636 299 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 PAHP00439 452 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 EPHA2P29317 976 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 CX3CR1P49238 355 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 CRISP1P54107 249 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 EFNB1P98172 346 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 KLHL12Q53G59 568 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 C1orf146Q5VVC0 180 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 TEX36Q5VZQ5 186 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 Q6ZSV7 163 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 SLC36A1Q7Z2H8 476 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 FGFRL1Q8N441 504 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 ZSCAN4Q8NAM6 433 aaPredicted RBP12.13□□□□□ -0.47
PNKP-202ENST00000593706 OR5K1Q8NHB7 308 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 CCL13Q99616 98 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 TOR3AQ9H497 397 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 SIRT7Q9NRC8 400 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 ZNRD1Q9P1U0 126 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 ZNF319Q9P2F9 582 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 DNAJB11Q9UBS4 358 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 VPREB3Q9UKI3 123 aa12.13□□□□□ -0.47
PNKP-202ENST00000593706 A0A1B0GW55 424 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 NDUFB3O43676 98 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 MITFO75030 526 aaPredicted RBP12.12□□□□□ -0.47
PNKP-202ENST00000593706 LHBP01229 141 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 ANXA2P07355 339 aaKnown RBP12.12□□□□□ -0.47
PNKP-202ENST00000593706 DUX4L2P0CJ85 424 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 DUX4L3P0CJ86 424 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 DUX4L4P0CJ87 422 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 DUX4L5P0CJ88 424 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 DUX4L6P0CJ89 424 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 DUX4L7P0CJ90 424 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 MUC1P15941 1255 aaPredicted RBP12.12□□□□□ -0.47
PNKP-202ENST00000593706 EEF1B2P24534 225 aaKnown RBP12.12□□□□□ -0.47
PNKP-202ENST00000593706 SLC15A1P46059 708 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 ZNF121P58317 390 aaPredicted RBP12.12□□□□□ -0.47
PNKP-202ENST00000593706 GUCA2AQ02747 115 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 IKZF1Q13422 519 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 PTGES3Q15185 160 aaKnown RBP12.12□□□□□ -0.47
PNKP-202ENST00000593706 TIGD6Q17RP2 521 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 WDR38Q5JTN6 314 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 SLC35D3Q5M8T2 416 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 KDM4DQ6B0I6 523 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 DUX4L9Q6RFH8 374 aaPredicted RBP12.12□□□□□ -0.47
PNKP-202ENST00000593706 SHFQ7M4L6 423 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 FAM216BQ8N7L0 139 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 ZNF454Q8N9F8 522 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 H1FXQ92522 213 aaKnown RBP12.12□□□□□ -0.47
PNKP-202ENST00000593706 OTULINQ96BN8 352 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 DUX4Q9UBX2 424 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 AP4S1Q9Y587 144 aa12.12□□□□□ -0.47
PNKP-202ENST00000593706 hCG_38984A0A1B0GV85 526 aa12.11□□□□□ -0.47
PNKP-202ENST00000593706 A0A1W2PRD5 423 aa12.11□□□□□ -0.47
PNKP-202ENST00000593706 A0A1W2PRF3 423 aa12.11□□□□□ -0.47
PNKP-202ENST00000593706 A0A1W2PRM7 423 aa12.11□□□□□ -0.47
PNKP-202ENST00000593706 ANKRD61A6NGH8 418 aa12.11□□□□□ -0.47
PNKP-202ENST00000593706 ZAR1LA6NP61 321 aa12.11□□□□□ -0.47
PNKP-202ENST00000593706 PRR32B1ATL7 298 aa12.11□□□□□ -0.47
PNKP-202ENST00000593706 PRKYO43930 277 aa12.11□□□□□ -0.47
PNKP-202ENST00000593706 ALOX5APP20292 161 aa12.11□□□□□ -0.47
PNKP-202ENST00000593706 HSD11B1P28845 292 aa12.11□□□□□ -0.47
PNKP-202ENST00000593706 DDOSTP39656 456 aa12.11□□□□□ -0.47
PNKP-202ENST00000593706 NAA10P41227 235 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms