RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 EBAG9O00559 213 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 SELENOFO60613 162 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 AVPP01185 164 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 GRPP07492 148 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 ACAA1P09110 424 aaPredicted RBP8.75□□□□□ -1.01
LIG3-212ENST00000590181 PSKH1P11801 424 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 HTR1FP30939 366 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 GNG3P63215 75 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 PDCD1Q15116 288 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 MPPED2Q15777 294 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 PRR31Q5SQ13 230 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 TMEM236Q5W0B7 351 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 ZNF841Q6ZN19 808 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 PLEKHG7Q6ZR37 379 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 C1orf122Q6ZSJ8 110 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 SPATC1Q76KD6 591 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 THAP5Q7Z6K1 395 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 FAM90A1Q86YD7 464 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 ZDHHC23Q8IYP9 409 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 FAM81AQ8TBF8 368 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 HAVCR2Q8TDQ0 301 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 NPRL2Q8WTW4 380 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 OR5P3Q8WZ94 311 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 MRPL48Q96GC5 212 aaKnown RBP8.75□□□□□ -1.01
LIG3-212ENST00000590181 OR8B4Q96RC9 309 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 NUDT16L1Q9BRJ7 211 aaKnown RBP8.75□□□□□ -1.01
LIG3-212ENST00000590181 PAPOLGQ9BWT3 736 aaKnown RBP8.75□□□□□ -1.01
LIG3-212ENST00000590181 UFSP2Q9NUQ7 469 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 FAM206AQ9NX38 181 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 DCAF16Q9NXF7 216 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 DNAJC27Q9NZQ0 273 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 N6AMT1Q9Y5N5 214 aa8.75□□□□□ -1.01
LIG3-212ENST00000590181 NOTCH1P46531 2555 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 hCG_1807616A0A1W2PRN6 198 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 SRRM5B3KS81 715 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 DLGAP1O14490 977 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 MPZL2O60487 215 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 DHRS3O75911 302 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 CD80P33681 288 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 ATP6V1E1P36543 226 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 PRSS12P56730 875 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 RPL15P61313 204 aaKnown RBP8.74□□□□□ -1.01
LIG3-212ENST00000590181 AWAT1Q58HT5 328 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 GPR157Q5UAW9 335 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 ZNF322Q6U7Q0 402 aaPredicted RBP8.74□□□□□ -1.01
LIG3-212ENST00000590181 Q6ZSR3 168 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 DOK3Q7L591 496 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 CMTM4Q8IZR5 234 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 GCSAMQ8N6F7 178 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 TCEANCQ8N8B7 351 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 OR8B12Q8NGG6 310 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 TBC1D15Q8TC07 691 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 RNF170Q96K19 258 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 RAB3IPQ96QF0 476 aaPredicted RBP8.74□□□□□ -1.01
LIG3-212ENST00000590181 IL4I1Q96RQ9 567 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 AMELYQ99218 206 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 MS4A7Q9GZW8 240 aaPredicted RBP8.74□□□□□ -1.01
LIG3-212ENST00000590181 PBOV1Q9GZY1 135 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 PRDM13Q9H4Q3 707 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 NOX4Q9NPH5 578 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 MMP26Q9NRE1 261 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 ENPP5Q9UJA9 477 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 OAZ3Q9UMX2 235 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 RHBDD3Q9Y3P4 386 aa8.74□□□□□ -1.01
LIG3-212ENST00000590181 CCDC182A6NF36 153 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 ZNF879B4DU55 563 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 LOC110117498-PIK3R3F6TDL0 507 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 ADAM20O43506 726 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 PRKYO43930 277 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 PLATP00750 562 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 IGLV3-1P01715 115 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 KRT8P05787 483 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 CXCR4P61073 352 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 ACTC1P68032 377 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 ACTA1P68133 377 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 PRDX4Q13162 271 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 LRRC10Q5BKY1 277 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 PRAMEF6Q5VXH4 476 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 WDR82Q6UXN9 313 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 ZNF573Q86YE8 665 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 C11orf53Q8IXP5 236 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 SLC35F2Q8IXU6 374 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 ELMOD2Q8IZ81 293 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 TMEM86BQ8N661 226 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 KIR3DL3Q8N743 410 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 BBS1Q8NFJ9 593 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 LRRC29Q8WV35 223 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 LRTOMTQ8WZ04 291 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 PIGCQ92535 297 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 SLC25A28Q96A46 364 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 FAM71F1Q96KD3 344 aaPredicted RBP8.73□□□□□ -1.01
LIG3-212ENST00000590181 HRASLS5Q96KN8 279 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 CIB1Q99828 191 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 PKP2Q99959 881 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 ADGRL4Q9HBW9 690 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 BRD7Q9NPI1 651 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 C8orf4Q9NR00 106 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 IMPAD1Q9NX62 359 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 USE1Q9NZ43 259 aa8.73□□□□□ -1.01
LIG3-212ENST00000590181 DNAJB11Q9UBS4 358 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms