RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TBPP20226 339 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 RBP2P50120 134 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 FOXG1P55316 489 aaPredicted RBP12.32□□□□□ -0.44
LIG3-205ENST00000585941 MTCP1P56278 107 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 RPS27AP62979 156 aaKnown RBP12.32□□□□□ -0.44
LIG3-205ENST00000585941 ZNF92Q03936 586 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 MAB21L1Q13394 359 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 LINC00303Q3SY05 128 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 Q6ZS92 163 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 ZBTB8BQ8NAP8 495 aaPredicted RBP12.32□□□□□ -0.44
LIG3-205ENST00000585941 GIMAP1Q8WWP7 306 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 RAB3CQ96E17 227 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 GPN1Q9HCN4 374 aaPredicted RBP12.32□□□□□ -0.44
LIG3-205ENST00000585941 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.32□□□□□ -0.44
LIG3-205ENST00000585941 GPR173Q9NS66 373 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 NKIRAS2Q9NYR9 191 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 KCNN3Q9UGI6 736 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 PTPRZ1P23471 2315 aaPredicted RBP12.31□□□□□ -0.44
LIG3-205ENST00000585941 C5orf49A4QMS7 147 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 ZNF736B4DX44 427 aaPredicted RBP12.31□□□□□ -0.44
LIG3-205ENST00000585941 J3QW42 95 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 ZNF780AO75290 641 aaPredicted RBP12.31□□□□□ -0.44
LIG3-205ENST00000585941 RAB3DO95716 219 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 CD74P04233 296 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 CD3DP04234 171 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 IL5P05113 134 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 HOXB1P14653 301 aaPredicted RBP12.31□□□□□ -0.44
LIG3-205ENST00000585941 APLNRP35414 380 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 FUT6P51993 359 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 CD83Q01151 205 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 GUSBP1Q15486 140 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 SLC22A6Q4U2R8 563 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 RTL6Q6ICC9 239 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 RPUSD3Q6P087 351 aaKnown RBP12.31□□□□□ -0.44
LIG3-205ENST00000585941 CRIP3Q6Q6R5 217 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 RNF144BQ7Z419 303 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 TRAPPC6BQ86SZ2 158 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 FTMTQ8N4E7 242 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 TMEM104Q8NE00 496 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 NPRL2Q8WTW4 380 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 PIGTQ969N2 578 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 BORCS8Q96FH0 119 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 RNF170Q96K19 258 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 POM121L2Q96KW2 1035 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 REPIN1Q9BWE0 567 aaKnown RBP12.31□□□□□ -0.44
LIG3-205ENST00000585941 TM2D1Q9BX74 207 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 SELENOIQ9C0D9 397 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 TP63Q9H3D4 680 aaPredicted RBP12.31□□□□□ -0.44
LIG3-205ENST00000585941 RANGRFQ9HD47 186 aaPredicted RBP12.31□□□□□ -0.44
LIG3-205ENST00000585941 PCDHB16Q9NRJ7 776 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 CACNA1GO43497 2377 aa12.31□□□□□ -0.44
LIG3-205ENST00000585941 URB1O60287 2271 aaKnown RBP12.31□□□□□ -0.44
LIG3-205ENST00000585941 HIST1H1DP16402 221 aaKnown RBP12.3□□□□□ -0.44
LIG3-205ENST00000585941 MGMTP16455 207 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 SDHBP21912 280 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 CPT2P23786 658 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 CBX5P45973 191 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 ATP1B3P54709 279 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 GNG2P59768 71 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 TNK1Q13470 666 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 ZMYND11Q15326 602 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 TFAP2EQ6VUC0 442 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 FJX1Q86VR8 437 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 CSNK2A3Q8NEV1 391 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 OR51T1Q8NGJ9 327 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 OR6K3Q8NGY3 331 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 DACT3Q96B18 629 aaPredicted RBP12.3□□□□□ -0.44
LIG3-205ENST00000585941 SLC25A21Q9BQT8 299 aaPredicted RBP12.3□□□□□ -0.44
LIG3-205ENST00000585941 METTL9Q9H1A3 318 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 OR10A4Q9H209 315 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 ZMAT3Q9HA38 289 aaKnown RBP12.3□□□□□ -0.44
LIG3-205ENST00000585941 IFT46Q9NQC8 304 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 NPDC1Q9NQX5 325 aaPredicted RBP12.3□□□□□ -0.44
LIG3-205ENST00000585941 SCP2D1Q9UJQ7 156 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 KLK13Q9UKR3 277 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 PLEKHA6Q9Y2H5 1048 aa12.3□□□□□ -0.44
LIG3-205ENST00000585941 MEIS3P1A6NDR6 274 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 WIPF3A6NGB9 483 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 A8MV72 311 aaPredicted RBP12.29□□□□□ -0.44
LIG3-205ENST00000585941 SNRPGP15A8MWD9 76 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 DISC1C4P0D8 188 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 ARPC1BO15143 372 aaKnown RBP12.29□□□□□ -0.44
LIG3-205ENST00000585941 CA11O75493 328 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 CRYABP02511 175 aaKnown RBP12.29□□□□□ -0.44
LIG3-205ENST00000585941 TMEM225BP0DP42 221 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 CCNOP22674 350 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 ZP1P60852 638 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 CBX3Q13185 183 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 PPA1Q15181 289 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 FAAP20Q6NZ36 180 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 ASCL4Q6XD76 172 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 Q6ZT83 130 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 MRPL21Q7Z2W9 205 aaKnown RBP12.29□□□□□ -0.44
LIG3-205ENST00000585941 OR51S1Q8NGJ8 323 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 OR5L1Q8NGL2 311 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 CMBLQ96DG6 245 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 POM121Q96HA1 1249 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 BOD1Q96IK1 185 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 GINS4Q9BRT9 223 aa12.29□□□□□ -0.44
LIG3-205ENST00000585941 BANF2Q9H503 90 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms