RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 NCCRP1Q6ZVX7 275 aaPredicted RBP9.08□□□□□ -0.96
SS18-217ENST00000580958 MOB3CQ70IA8 216 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 GDPD3Q7L5L3 318 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 ANGPTL5Q86XS5 388 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 ZNF101Q8IZC7 436 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 C17orf78Q8N4C9 275 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 C19orf18Q8NEA5 215 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 OR56B2PQ8NGI1 322 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 PIGCQ92535 297 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 HPS1Q92902 700 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 GCDHQ92947 438 aaPredicted RBP9.08□□□□□ -0.96
SS18-217ENST00000580958 YIPF5Q969M3 257 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 GAL3ST1Q99999 423 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 THAP7Q9BT49 309 aaPredicted RBP9.08□□□□□ -0.96
SS18-217ENST00000580958 ATG5Q9H1Y0 275 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 CRIM1Q9NZV1 1036 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 Q9UFV3 132 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 KCNN3Q9UGI6 736 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 AMDHD2Q9Y303 409 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 ZNF816-ZNF321PA0A0X1KG74 233 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 GGT3PA6NGU5 568 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 MSTNO14793 375 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 CTDSPLO15194 276 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 PLA2G10O15496 165 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 XRCC3O43542 346 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 GSTZ1O43708 216 aaPredicted RBP9.07□□□□□ -0.96
SS18-217ENST00000580958 GMDSO60547 372 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 NRASP01111 189 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 CD3GP09693 182 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 PTHLHP12272 177 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 RAB6AP20340 208 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 PRKACBP22694 351 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 OPRM1P35372 400 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 MMP15P51511 669 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 QRFPP83859 136 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 UNC119Q13432 240 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 KISS1Q15726 138 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 PLCXD3Q63HM9 321 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 MTFR2Q6P444 385 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 PNLDC1Q8NA58 520 aaKnown RBP9.07□□□□□ -0.96
SS18-217ENST00000580958 OR5D18Q8NGL1 313 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 UBASH3BQ8TF42 649 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 TNFAIP8L1Q8WVP5 186 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 TRIM63Q969Q1 353 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 C1orf147Q96MC9 270 aaPredicted RBP9.07□□□□□ -0.96
SS18-217ENST00000580958 C11orf54Q9H0W9 315 aaPredicted RBP9.07□□□□□ -0.96
SS18-217ENST00000580958 AUNIPQ9H7T9 357 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 NEK6Q9HC98 313 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 DIABLOQ9NR28 239 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 TBCCD1Q9NVR7 557 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 GPR160Q9UJ42 338 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 RAB22AQ9UL26 194 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 ING4Q9UNL4 249 aa9.07□□□□□ -0.96
SS18-217ENST00000580958 DSPP15924 2871 aaKnown RBP9.07□□□□□ -0.96
SS18-217ENST00000580958 TRAV18A0A075B6X5 111 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 FAM230AA0A1W2PPH8 454 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 TMEM8BA6NDV4 472 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 OR5H1A6NKK0 313 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 ZNF850A8MQ14 1090 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 TMEM14DPA8MWL7 114 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 EEF1E1-BLOC1S5C9J1V9 151 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 SMPD2O60906 423 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 IGKV3-15P01624 115 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 FAM157BP0CG42 384 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 VSIG8P0DPA2 414 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 BMP5P22003 454 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 RANBP1P43487 201 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 RFX2P48378 723 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 PRDX4Q13162 271 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 MRPL49Q13405 166 aaKnown RBP9.06□□□□□ -0.96
SS18-217ENST00000580958 SPATA46Q5T0L3 261 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 LHFPL2Q6ZUX7 228 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 OR2W3Q7Z3T1 314 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 CSNK2A3Q8NEV1 391 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 OR5L1Q8NGL2 311 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 OR52I2Q8NH67 350 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 SMIM4Q8WVI0 70 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 FAM46BQ96A09 425 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 PTX4Q96A99 478 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 PHF21AQ96BD5 680 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 SPSB1Q96BD6 273 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 BORCS8Q96FH0 119 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 CCDC120Q96HB5 630 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 PIGMQ9H3S5 423 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 OPA3Q9H6K4 179 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 OBP2BQ9NPH6 170 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 EIF3KQ9UBQ5 218 aaKnown RBP9.06□□□□□ -0.96
SS18-217ENST00000580958 FBLN5Q9UBX5 448 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 SLC7A11Q9UPY5 501 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 SLC25A15Q9Y619 301 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 COL6A6A6NMZ7 2263 aa9.06□□□□□ -0.96
SS18-217ENST00000580958 CADP27708 2225 aa9.05□□□□□ -0.96
SS18-217ENST00000580958 POLEQ07864 2286 aa9.05□□□□□ -0.96
SS18-217ENST00000580958 IGKV1-27A0A075B6S5 117 aa9.05□□□□□ -0.96
SS18-217ENST00000580958 IGHV1-18A0A0C4DH31 117 aa9.05□□□□□ -0.96
SS18-217ENST00000580958 A0A1W2PP11 408 aa9.05□□□□□ -0.96
SS18-217ENST00000580958 CD300LBA8K4G0 201 aa9.05□□□□□ -0.96
SS18-217ENST00000580958 A8MXE2 369 aa9.05□□□□□ -0.96
SS18-217ENST00000580958 GABARAPH6UMI1 98 aa9.05□□□□□ -0.96
SS18-217ENST00000580958 TPPPO94811 219 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms