RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ITCHQ96J02 903 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 ZNF778Q96MU6 729 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 CTRCQ99895 268 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 C7orf50Q9BRJ6 194 aaKnown RBP4.53□□□□□ -1.68
VPS53-219ENST00000576019 NAT9Q9BTE0 207 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 CALN1Q9BXU9 219 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 KRTAP4-5Q9BYR2 181 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 MMP28Q9H239 520 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 PSTPIP2Q9H939 334 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 SIAEQ9HAT2 523 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 CLN6Q9NWW5 311 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 NKIRAS1Q9NYS0 192 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 SENP1Q9P0U3 644 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 ROS1P08922 2347 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 PIKFYVEQ9Y2I7 2098 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 ARID1AO14497 2285 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 TRPM6Q9BX84 2022 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 KIR2DL5BA0A0G2JN68 375 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 KIR2DL5BA0A0G2JPC4 375 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 MEIOCA2RUB1 952 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 TVP23AA6NH52 213 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 ZNF487B1APH4 448 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 F6UB75 175 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 H3BN98 237 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 SLC17A2O00624 439 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 ITGB1BP1O14713 200 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 MRPS12O15235 138 aaKnown RBP4.52□□□□□ -1.69
VPS53-219ENST00000576019 FADS2O95864 444 aaKnown RBP4.52□□□□□ -1.69
VPS53-219ENST00000576019 H2AFZP0C0S5 128 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 ZNF250P15622 560 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 PGAM1P18669 254 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 TCN1P20061 433 aaPredicted RBP4.52□□□□□ -1.69
VPS53-219ENST00000576019 SERPINB8P50452 374 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 FZD2Q14332 565 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 ARL6IP1Q15041 203 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 PGGHGQ32M88 737 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 C5orf47Q569G3 176 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 ZNF324BQ6AW86 544 aaPredicted RBP4.52□□□□□ -1.69
VPS53-219ENST00000576019 ALKAL1Q6UXT8 129 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 CATSPER3Q86XQ3 398 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 BOD1L2Q8IYS8 172 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 KIR2DL5AQ8N109 375 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 MREGQ8N565 214 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 C3orf56Q8N813 242 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 CDRT4Q8N9R6 151 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 OR6N2Q8NGY6 317 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 OR4Q3Q8NH05 313 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 KIR2DL5BQ8NHK3 375 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 OR8D1Q8WZ84 308 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 PGLYRP4Q96LB8 373 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 SERPINB11Q96P15 392 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 LYSTQ99698 3801 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 RNF126Q9BV68 326 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 HES7Q9BYE0 225 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 NSRP1Q9H0G5 558 aaKnown RBP4.52□□□□□ -1.69
VPS53-219ENST00000576019 SYT4Q9H2B2 425 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 GOLT1BQ9Y3E0 138 aa4.52□□□□□ -1.69
VPS53-219ENST00000576019 IGHV1OR21-1A0A087WYE8 117 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 IGHV5-10-1A0A0J9YXX1 117 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 ZNF816-ZNF321PA0A0X1KG74 233 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 FABP12A6NFH5 140 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 RPL37AP8A6NKH3 93 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 COCHO43405 550 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 BMP15O95972 392 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 FSHBP01225 129 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 CATP04040 527 aaKnown RBP4.51□□□□□ -1.69
VPS53-219ENST00000576019 KCNE1P15382 129 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 TEAD1P28347 426 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 IL2RGP31785 369 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 CDC34P49427 236 aaPredicted RBP4.51□□□□□ -1.69
VPS53-219ENST00000576019 MLF1P58340 268 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 ACVR1Q04771 509 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 PDIA2Q13087 525 aaKnown RBP4.51□□□□□ -1.69
VPS53-219ENST00000576019 ATP6V1FQ16864 119 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 KCTD19Q17RG1 926 aaPredicted RBP4.51□□□□□ -1.69
VPS53-219ENST00000576019 TMEM215Q68D42 235 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 SETD3Q86TU7 594 aaPredicted RBP4.51□□□□□ -1.69
VPS53-219ENST00000576019 UNC93AQ86WB7 457 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 RDH10Q8IZV5 341 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 VKORC1L1Q8N0U8 176 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 SNX31Q8N9S9 440 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 MDS2Q8NDY4 140 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 VOPP1Q96AW1 172 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 EEF1AKMT3Q96AZ1 226 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 ZNF75AQ96N20 296 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 SERPINB12Q96P63 405 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 KCTD14Q9BQ13 255 aaPredicted RBP4.51□□□□□ -1.69
VPS53-219ENST00000576019 SYT15Q9BQS2 421 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 UQCC2Q9BRT2 126 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 CCDC94Q9BW85 323 aaPredicted RBP4.51□□□□□ -1.69
VPS53-219ENST00000576019 ARMC7Q9H6L4 198 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 WDR55Q9H6Y2 383 aaPredicted RBP4.51□□□□□ -1.69
VPS53-219ENST00000576019 SIRT7Q9NRC8 400 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 CTPS2Q9NRF8 586 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 RBAKQ9NYW8 714 aaPredicted RBP4.51□□□□□ -1.69
VPS53-219ENST00000576019 KCNIP1Q9NZI2 227 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 ASIC3Q9UHC3 531 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 PSMD13Q9UNM6 376 aa4.51□□□□□ -1.69
VPS53-219ENST00000576019 ZNF256Q9Y2P7 627 aaPredicted RBP4.51□□□□□ -1.69
VPS53-219ENST00000576019 PUS1Q9Y606 427 aaKnown RBP eCLIP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms