RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 KIR3DL2P43630 455 aa17.45■□□□□ 0.38
VPS53-210ENST00000571456 GATA4P43694 442 aa17.45■□□□□ 0.38
VPS53-210ENST00000571456 CCL8P80075 99 aa17.45■□□□□ 0.38
VPS53-210ENST00000571456 MVKQ03426 396 aa17.45■□□□□ 0.38
VPS53-210ENST00000571456 OR2G6Q5TZ20 316 aa17.45■□□□□ 0.38
VPS53-210ENST00000571456 ZNF676Q8N7Q3 588 aa17.45■□□□□ 0.38
VPS53-210ENST00000571456 ZNF485Q8NCK3 441 aa17.45■□□□□ 0.38
VPS53-210ENST00000571456 OR5AK2Q8NH90 309 aa17.45■□□□□ 0.38
VPS53-210ENST00000571456 RPS4Y2Q8TD47 263 aa17.45■□□□□ 0.38
VPS53-210ENST00000571456 FAM71F1Q96KD3 344 aaPredicted RBP17.45■□□□□ 0.38
VPS53-210ENST00000571456 PAPOLGQ9BWT3 736 aaKnown RBP17.45■□□□□ 0.38
VPS53-210ENST00000571456 CHODLQ9H9P2 273 aa17.45■□□□□ 0.38
VPS53-210ENST00000571456 UBAP1Q9NZ09 502 aa17.45■□□□□ 0.38
VPS53-210ENST00000571456 CLEC2DQ9UHP7 191 aa17.45■□□□□ 0.38
VPS53-210ENST00000571456 TANC2Q9HCD6 1990 aa17.45■□□□□ 0.38
VPS53-210ENST00000571456 IGHV1-69-2A0A0G2JMI3 117 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 TRBV2A0A0J9YWF9 115 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 LOC107986453A0A1B0GWG9 222 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 OGG1O15527 345 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 MLNRO43193 412 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 NDUFS7O75251 213 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 PTBP3O95758 552 aaKnown RBP17.44■□□□□ 0.38
VPS53-210ENST00000571456 SLC25A16P16260 332 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 CA6P23280 308 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 EEF1B2P24534 225 aaKnown RBP17.44■□□□□ 0.38
VPS53-210ENST00000571456 ACKR3P25106 362 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 TMEM33P57088 247 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 NANOS3P60323 173 aaKnown RBP17.44■□□□□ 0.38
VPS53-210ENST00000571456 TNK1Q13470 666 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 IRF3Q14653 427 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 CDK5R1Q15078 307 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 TSTQ16762 297 aaKnown RBP17.44■□□□□ 0.38
VPS53-210ENST00000571456 CLEC12BQ2HXU8 276 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 HFEQ30201 348 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 OR14K1Q8NGZ2 314 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 OR8S1Q8NH09 359 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 GATAD2BQ8WXI9 593 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 FAM168AQ92567 244 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 PPP1R14AQ96A00 147 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 SMIM19Q96E16 107 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 HIST1H2AAQ96QV6 131 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 MICU1Q9BPX6 476 aa17.44■□□□□ 0.38
VPS53-210ENST00000571456 LILRA1O75019 489 aa17.43■□□□□ 0.38
VPS53-210ENST00000571456 SERPINA3P01011 423 aa17.43■□□□□ 0.38
VPS53-210ENST00000571456 HPXP02790 462 aa17.43■□□□□ 0.38
VPS53-210ENST00000571456 GIFP27352 417 aa17.43■□□□□ 0.38
VPS53-210ENST00000571456 ZNF181Q2M3W8 571 aa17.43■□□□□ 0.38
VPS53-210ENST00000571456 ZDHHC23Q8IYP9 409 aa17.43■□□□□ 0.38
VPS53-210ENST00000571456 PP6455Q8WZ26 134 aa17.43■□□□□ 0.38
VPS53-210ENST00000571456 THRSPQ92748 146 aa17.43■□□□□ 0.38
VPS53-210ENST00000571456 HPS1Q92902 700 aa17.43■□□□□ 0.38
VPS53-210ENST00000571456 OR2V2Q96R30 315 aa17.43■□□□□ 0.38
VPS53-210ENST00000571456 RTL8AQ9BWD3 113 aa17.43■□□□□ 0.38
VPS53-210ENST00000571456 PAK1IP1Q9NWT1 392 aaPredicted RBP17.43■□□□□ 0.38
VPS53-210ENST00000571456 PIGLQ9Y2B2 252 aa17.43■□□□□ 0.38
VPS53-210ENST00000571456 RHBDD3Q9Y3P4 386 aa17.43■□□□□ 0.38
VPS53-210ENST00000571456 OR5B21A6NL26 309 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 TMEM210A6NLX4 147 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 GATBO75879 557 aaKnown RBP17.42■□□□□ 0.38
VPS53-210ENST00000571456 NCR1O76036 304 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 ZFPL1O95159 310 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 SPHARQ15513 63 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 CLVS2Q5SYC1 327 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 TMEM42Q69YG0 159 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 SVOPQ8N4V2 548 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 OR10AD1Q8NGE0 317 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 GTF3AQ92664 365 aaKnown RBP17.42■□□□□ 0.38
VPS53-210ENST00000571456 MEGF10Q96KG7 1140 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 PIMREGQ9BSJ6 248 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 ISYNA1Q9NPH2 558 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 ERVK-18Q9QC07 812 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 LRCH1Q9Y2L9 728 aa17.42■□□□□ 0.38
VPS53-210ENST00000571456 DYSFO75923 2080 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 LRRC30A6NM36 301 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 E9PI62 339 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 PRSS12P56730 875 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 PRDX4Q13162 271 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 GPR50Q13585 617 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 TBCEQ15813 527 aaPredicted RBP17.41■□□□□ 0.38
VPS53-210ENST00000571456 KRTAP24-1Q3LI83 254 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 CHRFAM7AQ494W8 412 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 KCTD21Q4G0X4 260 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 DMKNQ6E0U4 476 aaPredicted RBP17.41■□□□□ 0.38
VPS53-210ENST00000571456 ZNF525Q8N782 197 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 OR5A2Q8NGI9 324 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 C10orf105Q8TEF2 133 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 ITLN1Q8WWA0 313 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 PIGCQ92535 297 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 ITPKCQ96DU7 683 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 CCDC90BQ9GZT6 254 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 NEK6Q9HC98 313 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 PPP1R3CQ9UQK1 317 aa17.41■□□□□ 0.38
VPS53-210ENST00000571456 F5H5P2 479 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 PLPP2O43688 288 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 NRASP01111 189 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 HLA-DPB1P04440 258 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 CD2P06729 351 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 ODF4Q2M2E3 257 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 CEACAM21Q3KPI0 293 aa17.4■□□□□ 0.38
VPS53-210ENST00000571456 YIF1BQ5BJH7 314 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms