RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 RHBDL1O75783 438 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 TXNDC12O95881 172 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 LYL1P12980 280 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 ZNF823P16415 610 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 KDELR2P33947 212 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 RPS27P42677 84 aaKnown RBP12.98□□□□□ -0.33
CLK3-223ENST00000568488 SELENOWP63302 87 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 CYLC2Q14093 348 aaPredicted RBP12.98□□□□□ -0.33
CLK3-223ENST00000568488 TAF13Q15543 124 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 ZNF782Q6ZMW2 699 aaPredicted RBP12.98□□□□□ -0.33
CLK3-223ENST00000568488 DPY19L2P2Q6ZN68 376 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 MEPCEQ7L2J0 689 aaKnown RBP12.98□□□□□ -0.33
CLK3-223ENST00000568488 OR4X2Q8NGF9 303 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 GPX7Q96SL4 187 aaPredicted RBP12.98□□□□□ -0.33
CLK3-223ENST00000568488 NMNAT3Q96T66 252 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 MICU1Q9BPX6 476 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 ZNF649Q9BS31 505 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 RPRD1BQ9NQG5 326 aaKnown RBP12.98□□□□□ -0.33
CLK3-223ENST00000568488 NLKQ9UBE8 527 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 STAB2Q8WWQ8 2551 aa12.98□□□□□ -0.33
CLK3-223ENST00000568488 hCG_1809904A0A1W2PP81 198 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 A0A1W2PPE2 198 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 A0A1W2PPH5 198 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 A0A1W2PR64 198 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 A0A1W2PRV1 198 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 FAM90A8PA6NJQ4 464 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 OR2AT4A6NND4 320 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 ARG1P05089 322 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 MXRA7P84157 204 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 IL5RAQ01344 420 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 KCTD8Q6ZWB6 473 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 SLC16A9Q7RTY1 509 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 CYB561A3Q8NBI2 242 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 Q8NFD4 153 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 OR10Z1Q8NGY1 313 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 OR5K1Q8NHB7 308 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 RSRC1Q96IZ7 334 aaKnown RBP12.97□□□□□ -0.33
CLK3-223ENST00000568488 SH3GL1Q99961 368 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 COPS4Q9BT78 406 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 PAPOLGQ9BWT3 736 aaKnown RBP12.97□□□□□ -0.33
CLK3-223ENST00000568488 TMEM120AQ9BXJ8 343 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 TLNRD1Q9H1K6 362 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 FN3KQ9H479 309 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 CENPMQ9NSP4 180 aa12.97□□□□□ -0.33
CLK3-223ENST00000568488 H0YHG0 523 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 XRCC2O43543 280 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 GLRA1P23415 457 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 SLC25A1P53007 311 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 FAM3AP98173 230 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 SPIBQ01892 262 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 TIGD6Q17RP2 521 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 AGBL2Q5U5Z8 902 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 TMEM200BQ69YZ2 307 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 ERICH5Q6P6B1 374 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 C10orf99Q6UWK7 81 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 VTCN1Q7Z7D3 282 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 OR4K13Q8NH42 304 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 FOXRED1Q96CU9 486 aaPredicted RBP12.96□□□□□ -0.33
CLK3-223ENST00000568488 MALSU1Q96EH3 234 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 MRPL22Q9NWU5 206 aaKnown RBP12.96□□□□□ -0.33
CLK3-223ENST00000568488 RHBDD3Q9Y3P4 386 aa12.96□□□□□ -0.33
CLK3-223ENST00000568488 LSM4Q9Y4Z0 139 aaKnown RBP12.96□□□□□ -0.33
CLK3-223ENST00000568488 ANXA2P2A6NMY6 339 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 H3BUI4 141 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 CCL3L1P16619 93 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 JUNBP17275 347 aaPredicted RBP12.95□□□□□ -0.34
CLK3-223ENST00000568488 OTX1P32242 354 aaPredicted RBP12.95□□□□□ -0.34
CLK3-223ENST00000568488 FXYD6P3P58550 94 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 RPL31P62899 125 aaKnown RBP12.95□□□□□ -0.34
CLK3-223ENST00000568488 KCTD18Q6PI47 426 aaPredicted RBP12.95□□□□□ -0.34
CLK3-223ENST00000568488 PIGWQ7Z7B1 504 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 C11orf42Q8N5U0 333 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 OR4M1Q8NGD0 313 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 OR51D1Q8NGF3 324 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 OR4C15Q8NGM1 316 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 REEP6Q96HR9 211 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 C7orf26Q96N11 449 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 PRR25Q96S07 402 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 KCNJ15Q99712 375 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 RTL8AQ9BWD3 113 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 YY1AP1Q9H869 796 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 TBL2Q9Y4P3 447 aaKnown RBP12.95□□□□□ -0.34
CLK3-223ENST00000568488 HYDINQ4G0P3 5121 aa12.95□□□□□ -0.34
CLK3-223ENST00000568488 IGKV1D-17A0A075B6S4 117 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 UNC119BA6NIH7 251 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 RAMP3O60896 148 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 LPLP06858 475 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 ANXA2P07355 339 aaKnown RBP12.94□□□□□ -0.34
CLK3-223ENST00000568488 PSG2P11465 335 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 HIST1H1CP16403 213 aaKnown RBP12.94□□□□□ -0.34
CLK3-223ENST00000568488 OR12D2P58182 307 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 SLC34A1Q06495 639 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 GFOD2Q3B7J2 385 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 ETV3LQ6ZN32 361 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 ZBTB46Q86UZ6 589 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 ZDHHC21Q8IVQ6 265 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 SPSB4Q96A44 273 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 SGK3Q96BR1 496 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 SP140LQ9H930 580 aa12.94□□□□□ -0.34
CLK3-223ENST00000568488 USE1Q9NZ43 259 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms