RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 LLPHQ9BRT6 129 aaKnown RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 NUDT9Q9BW91 350 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 FBXO44Q9H4M3 255 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 RGCCQ9H4X1 137 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 C8orf33Q9H7E9 229 aaPredicted RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 PARVGQ9HBI0 331 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 SPACA1Q9HBV2 294 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 CSNK1G1Q9HCP0 422 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 MYOZ1Q9NP98 299 aaPredicted RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 ACP6Q9NPH0 428 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 LZTFL1Q9NQ48 299 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 CHRAC1Q9NRG0 131 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 TUBG2Q9NRH3 451 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 MRPL22Q9NWU5 206 aaKnown RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 GCNT4Q9P109 453 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 UXTQ9UBK9 157 aaPredicted RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 TBC1D24Q9ULP9 559 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 YARS2Q9Y2Z4 477 aaKnown RBP0.99□□□□□ -2.25
VPS35-207ENST00000568191 NEURL4Q96JN8 1562 aa0.99□□□□□ -2.25
VPS35-207ENST00000568191 USP47Q96K76 1375 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 TENM1Q9UKZ4 2725 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 ZBED9Q6R2W3 1325 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 MYO3BQ8WXR4 1341 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 A0A0J9YYE9 177 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 A0A1W2PPV4 95 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 SMCO3A2RU48 225 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 C4orf51C9J302 202 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 E7EQL1 145 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 TEX46H3BTG2 121 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 LSM1O15116 133 aaKnown RBP0.98□□□□□ -2.25
VPS35-207ENST00000568191 AQP8O94778 261 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 SNAI1O95863 264 aaPredicted RBP0.98□□□□□ -2.25
VPS35-207ENST00000568191 TRBC1P01850 177 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 MBP02144 154 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 APOA1P02647 267 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 FTH1P02794 183 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 S100A6P06703 90 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 STAG3L2P0CL84 134 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 PGA4P0DJD7 388 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 PGA3P0DJD8 388 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 PGA5P0DJD9 388 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 NEFHP12036 1026 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 ZNF24P17028 368 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 GABRG2P18507 467 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 GSTM3P21266 225 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 IL32P24001 234 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 HTR2BP41595 481 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 BCAP31P51572 246 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 PLTPP55058 493 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 MAP3K7CLP57077 242 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 DAOAP59103 153 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 KRTAP12-1P59990 96 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 YWHAEP62258 255 aaKnown RBP0.98□□□□□ -2.25
VPS35-207ENST00000568191 RAB11AP62491 216 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 COTL1Q14019 142 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 RAB11BQ15907 218 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 ZNF829Q3KNS6 432 aaPredicted RBP0.98□□□□□ -2.25
VPS35-207ENST00000568191 SP6Q3SY56 376 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 PYDC2Q56P42 97 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 MLIPQ5VWP3 458 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 TMEM53Q6P2H8 277 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 TTC23LQ6PF05 361 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 SLC16A14Q7RTX9 510 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 VTCN1Q7Z7D3 282 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 LINC00523Q86TU6 105 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 SYCE1Q8N0S2 351 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 PQLC3Q8N755 202 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 CLHC1Q8NHS4 586 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 LYPD6BQ8NI32 183 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 DDI1Q8WTU0 396 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 PDCD6IPQ8WUM4 868 aaKnown RBP0.98□□□□□ -2.25
VPS35-207ENST00000568191 ASZ1Q8WWH4 475 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 ELMO1Q92556 727 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 TOP1MTQ969P6 601 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 TGS1Q96RS0 853 aaKnown RBP0.98□□□□□ -2.25
VPS35-207ENST00000568191 KCNS3Q9BQ31 491 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 CENPKQ9BS16 269 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 CCDC94Q9BW85 323 aaPredicted RBP0.98□□□□□ -2.25
VPS35-207ENST00000568191 BBS2Q9BXC9 721 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 ELOVL6Q9H5J4 265 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 TMEM38AQ9H6F2 299 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 ZNF160Q9HCG1 818 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 LYRM4Q9HD34 91 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 TREM1Q9NP99 234 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 C20orf96Q9NUD7 363 aaPredicted RBP0.98□□□□□ -2.25
VPS35-207ENST00000568191 RBFOX1Q9NWB1 397 aaKnown RBP0.98□□□□□ -2.25
VPS35-207ENST00000568191 TAS2R5Q9NYW4 299 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 AHSPQ9NZD4 102 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 IL37Q9NZH6 218 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 PITPNC1Q9UKF7 332 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 SLC17A4Q9Y2C5 497 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 RHBDD3Q9Y3P4 386 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 BZW2Q9Y6E2 419 aaKnown RBP0.98□□□□□ -2.25
VPS35-207ENST00000568191 R4GN34 69 aa0.98□□□□□ -2.25
VPS35-207ENST00000568191 COL5A3P25940 1745 aaPredicted RBP0.98□□□□□ -2.25
VPS35-207ENST00000568191 SBNO1A3KN83 1393 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 TRBV11-1A0A0K0K1C0 115 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 A0A1B0GUH1 482 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 LYRM9A8MSI8 78 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 SYCE1LA8MT33 242 aa0.97□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms