RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 OR51E1Q8TCB6 317 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 RPL3LQ92901 407 aaKnown RBP15.27■□□□□ 0.04
CLN3-214ENST00000565140 TECTBQ96PL2 329 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 PKP2Q99959 881 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 GABARAPL3Q9BY60 117 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 RIBC2Q9H4K1 309 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 TRIM36Q9NQ86 728 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 HAO2Q9NYQ3 351 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 ERVK-18Q9QC07 812 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 ENOPH1Q9UHY7 261 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 ZNF391Q9UJN7 358 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 IKZF2Q9UKS7 526 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 SOX21Q9Y651 276 aaPredicted RBP15.27■□□□□ 0.04
CLN3-214ENST00000565140 H3BNX3 289 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 NDUFA2O43678 99 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 IGLV3-1P01715 115 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 PPIAL4GP0DN37 164 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 NPY4RP50391 375 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 RIDAP52758 137 aaKnown RBP15.26■□□□□ 0.03
CLN3-214ENST00000565140 FAM76BQ5HYJ3 339 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 DMRTC1Q5HYR2 192 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 CCDC121Q6ZUS5 278 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 KRT74Q7RTS7 529 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 SIGLECL1Q8N7X8 197 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 HPSE2Q8WWQ2 592 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 UPRTQ96BW1 309 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 RNF170Q96K19 258 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 RTL8AQ9BWD3 113 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 GPR84Q9NQS5 396 aa15.26■□□□□ 0.03
CLN3-214ENST00000565140 A0A1B0GW55 424 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 DUX4L2P0CJ85 424 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 DUX4L3P0CJ86 424 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 DUX4L4P0CJ87 422 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 DUX4L5P0CJ88 424 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 DUX4L6P0CJ89 424 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 DUX4L7P0CJ90 424 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 CFHR2P36980 270 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 MAP2K3P46734 347 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 FGF12P61328 243 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 DUX4L9Q6RFH8 374 aaPredicted RBP15.25■□□□□ 0.03
CLN3-214ENST00000565140 PLEKHG7Q6ZR37 379 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 SSX6Q7RTT6 188 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 GID4Q8IVV7 300 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 FGFRL1Q8N441 504 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 SCCPDHQ8NBX0 429 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 OR51G2Q8NGK0 314 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 FAM216AQ8WUB2 273 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 UBE2FQ969M7 185 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 FAM71F1Q96KD3 344 aaPredicted RBP15.25■□□□□ 0.03
CLN3-214ENST00000565140 ZNF48Q96MX3 618 aaPredicted RBP15.25■□□□□ 0.03
CLN3-214ENST00000565140 JMJD8Q96S16 334 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 RBM4BQ9BQ04 359 aaKnown RBP15.25■□□□□ 0.03
CLN3-214ENST00000565140 CLN6Q9NWW5 311 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 DUX4Q9UBX2 424 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 NUFIP1Q9UHK0 495 aaKnown RBP15.25■□□□□ 0.03
CLN3-214ENST00000565140 MRM2Q9UI43 246 aaKnown RBP15.25■□□□□ 0.03
CLN3-214ENST00000565140 NBEAL1Q6ZS30 2694 aa15.25■□□□□ 0.03
CLN3-214ENST00000565140 ZNF816-ZNF321PA0A0X1KG74 233 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 TMEM210A6NLX4 147 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 SRRM5B3KS81 715 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 TRIM77I1YAP6 450 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 DVL1O14640 695 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 TMPRSS2O15393 492 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 ENSAO43768 121 aaKnown RBP15.24■□□□□ 0.03
CLN3-214ENST00000565140 TTRP02766 147 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 MUC1P15941 1255 aaPredicted RBP15.24■□□□□ 0.03
CLN3-214ENST00000565140 GMFBP60983 142 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 MICBQ29980 383 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 ZNF829Q3KNS6 432 aaPredicted RBP15.24■□□□□ 0.03
CLN3-214ENST00000565140 CEP78Q5JTW2 689 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 KCTD8Q6ZWB6 473 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 COMMD2Q86X83 199 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 ZDHHC23Q8IYP9 409 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 FAM81AQ8TBF8 368 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 MNTQ99583 582 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 TBX5Q99593 518 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 CCL13Q99616 98 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 WDR13Q9H1Z4 485 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 ABCB9Q9NP78 766 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 KAAG1Q9UBP8 84 aa15.24■□□□□ 0.03
CLN3-214ENST00000565140 WARS2Q9UGM6 360 aaKnown RBP15.24■□□□□ 0.03
CLN3-214ENST00000565140 ZNF670-ZNF695F2Z2N8 137 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 APOL3O95236 402 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 PLATP00750 562 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 ALPLP05186 524 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 AMY2BP19961 511 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 HTR1FP30939 366 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 GPM6AP51674 278 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 EGR3Q06889 387 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 WDR38Q5JTN6 314 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 CD276Q5ZPR3 534 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 DOK3Q7L591 496 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 OR5T2Q8NGG2 359 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 EME1Q96AY2 570 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 MS4A7Q9GZW8 240 aaPredicted RBP15.23■□□□□ 0.03
CLN3-214ENST00000565140 GTF2A1LQ9UNN4 478 aa15.23■□□□□ 0.03
CLN3-214ENST00000565140 TRAV40A0A0B4J280 105 aa15.22■□□□□ 0.03
CLN3-214ENST00000565140 A0A1W2PQL4 384 aaPredicted RBP15.22■□□□□ 0.03
CLN3-214ENST00000565140 LOC110117498-PIK3R3F6TDL0 507 aa15.22■□□□□ 0.03
CLN3-214ENST00000565140 AKR7A2O43488 359 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms