RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 ABCA2Q9BZC7 2435 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 TEP1Q99973 2627 aaKnown RBP14.06□□□□□ -0.16
CLK3-207ENST00000562389 CSPG4Q6UVK1 2322 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 A0A1B0GVI7 797 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 ISPDA4D126 451 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 EFCAB10A6NFE3 127 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 TMEM210A6NLX4 147 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 SYT7O43581 403 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 IRF2P14316 349 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 FAHP16930 419 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 ZNF16P17020 682 aaPredicted RBP14.06□□□□□ -0.16
CLK3-207ENST00000562389 NANOS3P60323 173 aaKnown RBP14.06□□□□□ -0.16
CLK3-207ENST00000562389 LMO4P61968 165 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 ODF4Q2M2E3 257 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 TMEM155Q4W5P6 130 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 TMEM42Q69YG0 159 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 Q71RC1 249 aaPredicted RBP14.06□□□□□ -0.16
CLK3-207ENST00000562389 OR1M1Q8NGA1 313 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 RAB39BQ96DA2 213 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 TMEM80Q96HE8 168 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 GAL3ST1Q99999 423 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 ANKRD60Q9BZ19 345 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 TLNRD1Q9H1K6 362 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 ZNF665Q9H7R5 613 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 FRRS1LQ9P0K9 344 aa14.06□□□□□ -0.16
CLK3-207ENST00000562389 CAB39Q9Y376 341 aaPredicted RBP14.06□□□□□ -0.16
CLK3-207ENST00000562389 EXOSC1Q9Y3B2 195 aaKnown RBP14.06□□□□□ -0.16
CLK3-207ENST00000562389 LOC107986453A0A1B0GWG9 222 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 IGHV2-5P01817 119 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 ISG15P05161 165 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 GRPP07492 148 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 ZNF12P17014 697 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 MYL12AP19105 171 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 MYF6P23409 242 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 MDH2P40926 338 aaKnown RBP14.05□□□□□ -0.16
CLK3-207ENST00000562389 ETV1P50549 477 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 CDH15P55291 814 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 ZNF154Q13106 437 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 MED21Q13503 144 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 ALKBH1Q13686 389 aaKnown RBP14.05□□□□□ -0.16
CLK3-207ENST00000562389 ZMYND11Q15326 602 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 TMEM244Q5VVB8 128 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 LRRC28Q86X40 367 aaPredicted RBP14.05□□□□□ -0.16
CLK3-207ENST00000562389 MUC20Q8N307 709 aaPredicted RBP14.05□□□□□ -0.16
CLK3-207ENST00000562389 SPICQ8N5J4 248 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 MSI2Q96DH6 328 aaKnown RBP14.05□□□□□ -0.16
CLK3-207ENST00000562389 HIST1H2AAQ96QV6 131 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 FGF23Q9GZV9 251 aaPredicted RBP14.05□□□□□ -0.16
CLK3-207ENST00000562389 C1orf123Q9NWV4 160 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 RNF7Q9UBF6 113 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 PSORS1C1Q9UIG5 152 aa14.05□□□□□ -0.16
CLK3-207ENST00000562389 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.04□□□□□ -0.16
CLK3-207ENST00000562389 PPIAL4EA0A075B759 164 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 A6NLC8 198 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 OR4C45A6NMZ5 311 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 PPIAL4DF5H284 164 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 XPNPEP2O43895 674 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 NRASP01111 189 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 PPIAL4FP0DN26 164 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 THBS2P35442 1172 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 VHLP40337 213 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 TGM4P49221 684 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 GBX2P52951 348 aaPredicted RBP14.04□□□□□ -0.16
CLK3-207ENST00000562389 CSNK2BP67870 215 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 ST3GAL4Q11206 333 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 CEACAM21Q3KPI0 293 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 FAM76BQ5HYJ3 339 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 CEP78Q5JTW2 689 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 CLVS2Q5SYC1 327 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 TMPRSS11AQ6ZMR5 421 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 C11orf53Q8IXP5 236 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 KLHL36Q8N4N3 616 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 LINC01356Q8N9X3 169 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 BPIFB6Q8NFQ5 453 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 OR5A2Q8NGI9 324 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 C10orf35Q96D05 121 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 RNF170Q96K19 258 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 PLEKHA1Q9HB21 404 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 FKBP14Q9NWM8 211 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 PPIAL4AQ9Y536 164 aa14.04□□□□□ -0.16
CLK3-207ENST00000562389 MALRD1Q5VYJ5 2156 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 OR5B21A6NL26 309 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 B4DSR2 109 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 FAM157AC9JC47 383 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 CCDC159P0C7I6 412 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 GNG3P63215 75 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 C6orf141Q5SZD1 244 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 PLCXD3Q63HM9 321 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 FAM166AQ6J272 317 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 ZNF826PQ6ZT77 177 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 MOB3CQ70IA8 216 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 AHSA2Q719I0 299 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 RDH10Q8IZV5 341 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 YAE1D1Q9NRH1 226 aa14.03□□□□□ -0.16
CLK3-207ENST00000562389 CHCHD3Q9NX63 227 aaKnown RBP14.03□□□□□ -0.16
CLK3-207ENST00000562389 hCG_1807616A0A1W2PRN6 198 aa14.02□□□□□ -0.17
CLK3-207ENST00000562389 TMEM212A6NML5 194 aa14.02□□□□□ -0.17
CLK3-207ENST00000562389 A8MV72 311 aaPredicted RBP14.02□□□□□ -0.17
CLK3-207ENST00000562389 E9PI62 339 aa14.02□□□□□ -0.17
CLK3-207ENST00000562389 H3BSH0 61 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms