RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 ELF3P78545 371 aaPredicted RBP13.03□□□□□ -0.32
VPS39-203ENST00000561797 ZNF829Q3KNS6 432 aaPredicted RBP13.03□□□□□ -0.32
VPS39-203ENST00000561797 PLEKHG7Q6ZR37 379 aa13.03□□□□□ -0.32
VPS39-203ENST00000561797 USP43Q70EL4 1123 aa13.03□□□□□ -0.32
VPS39-203ENST00000561797 ZDHHC23Q8IYP9 409 aa13.03□□□□□ -0.32
VPS39-203ENST00000561797 OR5P3Q8WZ94 311 aa13.03□□□□□ -0.32
VPS39-203ENST00000561797 RPL3LQ92901 407 aaKnown RBP13.03□□□□□ -0.32
VPS39-203ENST00000561797 DACT3Q96B18 629 aaPredicted RBP13.03□□□□□ -0.32
VPS39-203ENST00000561797 SEH1LQ96EE3 360 aa13.03□□□□□ -0.32
VPS39-203ENST00000561797 HIST1H2AAQ96QV6 131 aa13.03□□□□□ -0.32
VPS39-203ENST00000561797 GABARAPL3Q9BY60 117 aa13.03□□□□□ -0.32
VPS39-203ENST00000561797 ABCB9Q9NP78 766 aa13.03□□□□□ -0.32
VPS39-203ENST00000561797 CLN6Q9NWW5 311 aa13.03□□□□□ -0.32
VPS39-203ENST00000561797 A0A0U1RQV5 110 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 ZNF816-ZNF321PA0A0X1KG74 233 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 C22orf46C9J442 243 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 LOC110117498-PIK3R3F6TDL0 507 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 H3BNX3 289 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 TRIM77I1YAP6 450 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 NDUFA2O43678 99 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 APOL3O95236 402 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 IGHV4-38-2P0DP08 117 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 NPY4RP50391 375 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 MICBQ29980 383 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 DMRTC1Q5HYR2 192 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 CEP78Q5JTW2 689 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 TEX36Q5VZQ5 186 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 THAP5Q7Z6K1 395 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 BCL6BQ8N143 479 aaPredicted RBP13.02□□□□□ -0.33
VPS39-203ENST00000561797 SCCPDHQ8NBX0 429 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 JMJD8Q96S16 334 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 MNTQ99583 582 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 FGF23Q9GZV9 251 aaPredicted RBP13.02□□□□□ -0.33
VPS39-203ENST00000561797 SMURF1Q9HCE7 757 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 GPR84Q9NQS5 396 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 HAO2Q9NYQ3 351 aa13.02□□□□□ -0.33
VPS39-203ENST00000561797 WARS2Q9UGM6 360 aaKnown RBP13.02□□□□□ -0.33
VPS39-203ENST00000561797 NUFIP1Q9UHK0 495 aaKnown RBP13.02□□□□□ -0.33
VPS39-203ENST00000561797 TMEM210A6NLX4 147 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 EBAG9O00559 213 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 DVL1O14640 695 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 EI24O14681 340 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 TMPRSS2O15393 492 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 ENSAO43768 121 aaKnown RBP13.01□□□□□ -0.33
VPS39-203ENST00000561797 SRSF10O75494 262 aaKnown RBP13.01□□□□□ -0.33
VPS39-203ENST00000561797 RPP14O95059 124 aaKnown RBP13.01□□□□□ -0.33
VPS39-203ENST00000561797 TTRP02766 147 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 ATP6V1E1P36543 226 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 GPM6AP51674 278 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 FGF12P61328 243 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 ZIK1Q3SY52 487 aaPredicted RBP13.01□□□□□ -0.33
VPS39-203ENST00000561797 CD276Q5ZPR3 534 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 ZFP1Q6P2D0 407 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 MOB3CQ70IA8 216 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 SSX6Q7RTT6 188 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 SIGLECL1Q8N7X8 197 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 YIPF7Q8N8F6 280 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 OR5T2Q8NGG2 359 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 OR8J1Q8NGP2 316 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 HPSE2Q8WWQ2 592 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 UPRTQ96BW1 309 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 CCL13Q99616 98 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 MS4A7Q9GZW8 240 aaPredicted RBP13.01□□□□□ -0.33
VPS39-203ENST00000561797 TLNRD1Q9H1K6 362 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 ESM1Q9NQ30 184 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 MRM2Q9UI43 246 aaKnown RBP13.01□□□□□ -0.33
VPS39-203ENST00000561797 PIGLQ9Y2B2 252 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 ORC6Q9Y5N6 252 aa13.01□□□□□ -0.33
VPS39-203ENST00000561797 TRAV40A0A0B4J280 105 aa13□□□□□ -0.33
VPS39-203ENST00000561797 A0A1B0GW55 424 aa13□□□□□ -0.33
VPS39-203ENST00000561797 ZNF732B4DXR9 585 aa13□□□□□ -0.33
VPS39-203ENST00000561797 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13□□□□□ -0.33
VPS39-203ENST00000561797 FCN3O75636 299 aa13□□□□□ -0.33
VPS39-203ENST00000561797 DUX4L2P0CJ85 424 aa13□□□□□ -0.33
VPS39-203ENST00000561797 DUX4L3P0CJ86 424 aa13□□□□□ -0.33
VPS39-203ENST00000561797 DUX4L4P0CJ87 422 aa13□□□□□ -0.33
VPS39-203ENST00000561797 DUX4L5P0CJ88 424 aa13□□□□□ -0.33
VPS39-203ENST00000561797 DUX4L6P0CJ89 424 aa13□□□□□ -0.33
VPS39-203ENST00000561797 DUX4L7P0CJ90 424 aa13□□□□□ -0.33
VPS39-203ENST00000561797 MUC1P15941 1255 aaPredicted RBP13□□□□□ -0.33
VPS39-203ENST00000561797 FAHP16930 419 aa13□□□□□ -0.33
VPS39-203ENST00000561797 HTR1FP30939 366 aa13□□□□□ -0.33
VPS39-203ENST00000561797 CDC42P60953 191 aa13□□□□□ -0.33
VPS39-203ENST00000561797 ACTG1P63261 375 aa13□□□□□ -0.33
VPS39-203ENST00000561797 RIPPLY1Q0D2K3 151 aa13□□□□□ -0.33
VPS39-203ENST00000561797 WDR38Q5JTN6 314 aa13□□□□□ -0.33
VPS39-203ENST00000561797 BCL2L15Q5TBC7 163 aa13□□□□□ -0.33
VPS39-203ENST00000561797 DUX4L9Q6RFH8 374 aaPredicted RBP13□□□□□ -0.33
VPS39-203ENST00000561797 RBMS3Q6XE24 437 aaKnown RBP13□□□□□ -0.33
VPS39-203ENST00000561797 FGFRL1Q8N441 504 aa13□□□□□ -0.33
VPS39-203ENST00000561797 ZDHHC22Q8N966 263 aa13□□□□□ -0.33
VPS39-203ENST00000561797 OR10H4Q8NGA5 316 aa13□□□□□ -0.33
VPS39-203ENST00000561797 ZFAND2BQ8WV99 257 aa13□□□□□ -0.33
VPS39-203ENST00000561797 ST8SIA4Q92187 359 aa13□□□□□ -0.33
VPS39-203ENST00000561797 UBE2FQ969M7 185 aa13□□□□□ -0.33
VPS39-203ENST00000561797 EME1Q96AY2 570 aa13□□□□□ -0.33
VPS39-203ENST00000561797 PCGF1Q9BSM1 259 aa13□□□□□ -0.33
VPS39-203ENST00000561797 WDR13Q9H1Z4 485 aa13□□□□□ -0.33
VPS39-203ENST00000561797 SNTG1Q9NSN8 517 aa13□□□□□ -0.33
VPS39-203ENST00000561797 DNAJB11Q9UBS4 358 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms