RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	KCTD8	Q6ZWB6	473 aa		11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	THAP5	Q7Z6K1	395 aa		11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	TMEM179B	Q7Z7N9	219 aa		11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	BCL6B	Q8N143	479 aa	Predicted RBP	11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	KIR3DL3	Q8N743	410 aa		11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	C19orf18	Q8NEA5	215 aa		11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	TBC1D15	Q8TC07	691 aa		11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	SSMEM1	Q8WWF3	244 aa		11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	ST8SIA4	Q92187	359 aa		11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	ITPKC	Q96DU7	683 aa		11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	CNN2	Q99439	309 aa	Known RBP	11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	CNTD2	Q9H8S5	307 aa		11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	CTSZ	Q9UBR2	303 aa		11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	RHBDD3	Q9Y3P4	386 aa		11.69	□□□□□ -0.54
TPM1-223	ENST00000560445	BTBD17	A6NE02	478 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	SLC22A31	A6NKX4	558 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	OR5B21	A6NL26	309 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	PRKACG	P22612	351 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	RIDA	P52758	137 aa	Known RBP	11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	CRISP1	P54107	249 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	GNG3	P63215	75 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	APOF	Q13790	326 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	BLMH	Q13867	455 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	CDON	Q4KMG0	1287 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	ZNF826P	Q6ZT77	177 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	BTN2A1	Q7KYR7	527 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	SCCPDH	Q8NBX0	429 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	OR4F5	Q8NH21	305 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	NPRL2	Q8WTW4	380 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	LRTOMT	Q8WZ04	291 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	OR5P3	Q8WZ94	311 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	ZNF48	Q96MX3	618 aa	Predicted RBP	11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	PKP2	Q99959	881 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	ACOXL	Q9NUZ1	547 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	HAO2	Q9NYQ3	351 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	TVP23B	Q9NYZ1	205 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	RPUSD1	Q9UJJ7	312 aa	Known RBP	11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	LRP12	Q9Y561	859 aa		11.68	□□□□□ -0.54
TPM1-223	ENST00000560445	IGHV3OR16-10	A0A075B7F0	116 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	IGHV1-69D	A0A0B4J2H0	117 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	TMEM269	A0A1B0GVZ9	245 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	CDIPT	O14735	213 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	TNFRSF13B	O14836	293 aa	Predicted RBP	11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	IGHV1-69	P01742	117 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	EEF1B2	P24534	225 aa	Known RBP	11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	ROM1	Q03395	351 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	RIPPLY1	Q0D2K3	151 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	WDR38	Q5JTN6	314 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	ATPAF1	Q5TC12	328 aa	Predicted RBP	11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	FAHD1	Q6P587	224 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	BRD3OS	Q6XYD6	125 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	ZDHHC13	Q8IUH4	622 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	GID4	Q8IVV7	300 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	ZNF679	Q8IYX0	411 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	OR8B12	Q8NGG6	310 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	OR5K1	Q8NHB7	308 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	ZNF671	Q8TAW3	534 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	PIGC	Q92535	297 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	RNF170	Q96K19	258 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	DUX5	Q96PT3	197 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	AMELY	Q99218	206 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	OSBPL10	Q9BXB5	764 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	CADM1	Q9BY67	442 aa	Known RBP	11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	SLITRK2	Q9H156	845 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	DPAGT1	Q9H3H5	408 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	BEX1	Q9HBH7	125 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	KRT84	Q9NSB2	600 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	IKZF2	Q9UKS7	526 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	FAM96B	Q9Y3D0	163 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445	MMP24	Q9Y5R2	645 aa		11.67	□□□□□ -0.54
TPM1-223	ENST00000560445		A0A1W2PPH5	198 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	C5orf63	A6NC05	138 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	ZNF850	A8MQ14	1090 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	HOXA3	O43365	443 aa	Predicted RBP	11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	MMP9	P14780	707 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	SLC2A5	P22732	501 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	FAS	P25445	335 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	RBMX	P38159	391 aa	Known RBP	11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	CSNK2B	P67870	215 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	DEFB112	Q30KQ8	113 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	FAM76B	Q5HYJ3	339 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	C1orf146	Q5VVC0	180 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	NXNL2	Q5VZ03	156 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	NCR3LG1	Q68D85	454 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	METAP1D	Q6UB28	335 aa	Predicted RBP	11.66	□□□□□ -0.54
TPM1-223	ENST00000560445		Q6YL49	198 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	HS3ST5	Q8IZT8	346 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	TEAD3	Q99594	435 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	SIRPD	Q9H106	197 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	ZNF696	Q9H7X3	374 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	UNKL	Q9H9P5	680 aa	Known RBP	11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	SMURF1	Q9HCE7	757 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	ONECUT1	Q9UBC0	465 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	ENPP5	Q9UJA9	477 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	POLDIP2	Q9Y2S7	368 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	PCDHGB1	Q9Y5G3	927 aa		11.66	□□□□□ -0.54
TPM1-223	ENST00000560445	IGHV3OR15-7	A0A075B7D8	119 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	TRBV23-1	A0A0A0MS06	115 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445	ZNF670-ZNF695	F2Z2N8	137 aa		11.65	□□□□□ -0.54
TPM1-223	ENST00000560445		G3V2T6	193 aa		11.65	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms