RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 MT-ND2P03891 347 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 KRT8P05787 483 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 HTR1AP08908 422 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 DBTP11182 482 aaKnown RBP7.89□□□□□ -1.15
LDLR-211ENST00000560173 MYL12AP19105 171 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 ACKR3P25106 362 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 RBMXP38159 391 aaKnown RBP7.89□□□□□ -1.15
LDLR-211ENST00000560173 PMELP40967 661 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 LMO4P61968 165 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 ACTC1P68032 377 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 ACTA1P68133 377 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 ST3GAL4Q11206 333 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 RAB40BQ12829 278 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 BCL2L15Q5TBC7 163 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 CYB5R2Q6BCY4 276 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 PLEKHG7Q6ZR37 379 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 MOGAT3Q86VF5 341 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 ANKRD13BQ86YJ7 626 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 CSNK2A3Q8NEV1 391 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 Q8TCH9 128 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 ISOC1Q96CN7 298 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 MSI2Q96DH6 328 aaKnown RBP7.89□□□□□ -1.15
LDLR-211ENST00000560173 LGALS12Q96DT0 336 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 TMEM80Q96HE8 168 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 G6PC2Q9NQR9 355 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 MRPS18AQ9NVS2 196 aaKnown RBP7.89□□□□□ -1.15
LDLR-211ENST00000560173 PAK1IP1Q9NWT1 392 aaPredicted RBP7.89□□□□□ -1.15
LDLR-211ENST00000560173 EXOGQ9Y2C4 368 aaKnown RBP7.89□□□□□ -1.15
LDLR-211ENST00000560173 NPTNQ9Y639 398 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 ATRQ13535 2644 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 SVEP1Q4LDE5 3571 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 DYSFO75923 2080 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.88□□□□□ -1.15
LDLR-211ENST00000560173 INAFM1C9JVW0 142 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 LOC110117498-PIK3R3F6TDL0 507 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 TMEM178BH3BS89 294 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 SLC22A1O15245 554 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 FADS2O95864 444 aaKnown RBP7.88□□□□□ -1.15
LDLR-211ENST00000560173 CST4P01036 141 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 TTRP02766 147 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 PSMB9P28065 219 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 ZMYND11Q15326 602 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 SMN1Q16637 294 aaKnown RBP7.88□□□□□ -1.15
LDLR-211ENST00000560173 ZNF181Q2M3W8 571 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 CDONQ4KMG0 1287 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 GPR107Q5VW38 600 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 PRAMEF6Q5VXH4 476 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 LIPNQ5VXI9 398 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 KRT74Q7RTS7 529 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 PEG10Q86TG7 708 aaKnown RBP7.88□□□□□ -1.15
LDLR-211ENST00000560173 ELMOD2Q8IZ81 293 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 FTMTQ8N4E7 242 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 YIPF7Q8N8F6 280 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 SPERTQ8NA61 448 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 PLPP7Q8NBV4 271 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 OR51E1Q8TCB6 317 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 ITFG2Q969R8 447 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 ERGIC1Q969X5 290 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 PPP1R14AQ96A00 147 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 RNF166Q96A37 237 aaPredicted RBP7.88□□□□□ -1.15
LDLR-211ENST00000560173 TMIGD2Q96BF3 282 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 PAPOLGQ9BWT3 736 aaKnown RBP7.88□□□□□ -1.15
LDLR-211ENST00000560173 MND1Q9BWT6 205 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 PPP1R3EQ9H7J1 279 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 AMBNQ9NP70 447 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 GPR84Q9NQS5 396 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 YAE1D1Q9NRH1 226 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 ACOXLQ9NUZ1 547 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 OR52A1Q9UKL2 312 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 GTF2A1LQ9UNN4 478 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 DIMT1Q9UNQ2 313 aaKnown RBP7.88□□□□□ -1.15
LDLR-211ENST00000560173 EXOSC1Q9Y3B2 195 aaKnown RBP7.88□□□□□ -1.15
LDLR-211ENST00000560173 RHBDD3Q9Y3P4 386 aa7.88□□□□□ -1.15
LDLR-211ENST00000560173 MXRA5Q9NR99 2828 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 LOC100289279A0A1B0GTE1 492 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 A0A1B0GTI1 187 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 ISPDA4D126 451 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 LRRC30A6NM36 301 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 A8MV72 311 aaPredicted RBP7.87□□□□□ -1.15
LDLR-211ENST00000560173 FAM157AC9JC47 383 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 RPP14O95059 124 aaKnown RBP7.87□□□□□ -1.15
LDLR-211ENST00000560173 CYB5R3P00387 301 aaPredicted RBP7.87□□□□□ -1.15
LDLR-211ENST00000560173 IGHV2-5P01817 119 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 IGHA1P01876 353 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 GNALP38405 381 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 BTG1P62324 171 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 MZT1Q08AG7 82 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 PRDX4Q13162 271 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 IRF3Q14653 427 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 MPPED2Q15777 294 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 TP53I3Q53FA7 332 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 LINC00299Q6ZSB3 139 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 FAM220AQ7Z4H9 259 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 WDR86Q86TI4 376 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 COMMD2Q86X83 199 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 CATSPERDQ86XM0 798 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 ACBD7Q8N6N7 88 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 LINC01356Q8N9X3 169 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 OR11L1Q8NGX0 322 aa7.87□□□□□ -1.15
LDLR-211ENST00000560173 OR8S1Q8NH09 359 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms