RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 OR2AE1Q8NHA4 323 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 OR10A2Q9H208 303 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 ZNF160Q9HCG1 818 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 EHFQ9NZC4 300 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 AQP7P3A6NL99 342 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 ABCD4O14678 606 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 ANGPTL7O43827 346 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 DKK1O94907 266 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 HPNP05981 417 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 PATE4P0C8F1 98 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 FCGR2AP12318 317 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 SSC4DQ8WTU2 575 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 ZNF701Q9NV72 531 aaPredicted RBP11.31□□□□□ -0.6
LDLR-207ENST00000558013 LOC400499M0QZD8 3231 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 CTRB1P17538 263 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 GABRR1P24046 479 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 OR3A2P47893 321 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 RAB32Q13637 225 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 ZNF169Q14929 603 aaPredicted RBP11.31□□□□□ -0.6
LDLR-207ENST00000558013 SNAI3Q3KNW1 292 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 CTRB2Q6GPI1 263 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 PPP1R3BQ86XI6 285 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 GTPBP8Q8N3Z3 284 aaPredicted RBP11.31□□□□□ -0.6
LDLR-207ENST00000558013 NBEAQ8NFP9 2946 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 MARC2Q969Z3 335 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 METTL8Q9H825 291 aaKnown RBP11.31□□□□□ -0.6
LDLR-207ENST00000558013 FBLN5Q9UBX5 448 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 MCTS1Q9ULC4 181 aaKnown RBP11.31□□□□□ -0.6
LDLR-207ENST00000558013 AHCTF1Q8WYP5 2266 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 K7ESF4 209 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 MSTNO14793 375 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 GLI4P10075 376 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 MSX1P28360 303 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 RRADP55042 308 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 ENDOGQ14249 297 aaKnown RBP11.3□□□□□ -0.6
LDLR-207ENST00000558013 NKAPLQ5M9Q1 402 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 RAET1LQ5VY80 246 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 FAHD2BQ6P2I3 314 aaPredicted RBP11.3□□□□□ -0.6
LDLR-207ENST00000558013 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.3□□□□□ -0.6
LDLR-207ENST00000558013 FAHD2AQ96GK7 314 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 SLC39A1Q9NY26 324 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 FLVCR1Q9Y5Y0 555 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 SHANK1Q9Y566 2161 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 IGLV3-32A0A0A0MS00 114 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 DHRS7CA6NNS2 312 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 SFT2D2O95562 160 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 CD63P08962 238 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 GSTP1P09211 210 aaKnown RBP11.3□□□□□ -0.6
LDLR-207ENST00000558013 NTF4P34130 210 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 ZNF468Q5VIY5 522 aaPredicted RBP11.3□□□□□ -0.6
LDLR-207ENST00000558013 DOK3Q7L591 496 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 C20orf196Q8IYI0 205 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 PUSL1Q8N0Z8 303 aaKnown RBP11.3□□□□□ -0.6
LDLR-207ENST00000558013 SPEM1Q8N4L4 309 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 OR56B1Q8NGI3 324 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 DYRK2Q92630 601 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 PCED1AQ9H1Q7 454 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 PIGLQ9Y2B2 252 aa11.3□□□□□ -0.6
LDLR-207ENST00000558013 PMS2P1A4D2B8 440 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 SFTPBP07988 381 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 RPS2P15880 293 aaKnown RBP11.29□□□□□ -0.6
LDLR-207ENST00000558013 S100A10P60903 97 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 CHAF1BQ13112 559 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 VAX1Q5SQQ9 334 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 CLEC9AQ6UXN8 241 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 BATF2Q8N1L9 274 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 SLC22A8Q8TCC7 542 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 OCSTAMPQ9BR26 566 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 NKX6-2Q9C056 277 aaPredicted RBP11.29□□□□□ -0.6
LDLR-207ENST00000558013 DNTTIP1Q9H147 329 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 FAM96BQ9Y3D0 163 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 TEX13DA0A0J9YY54 714 aaPredicted RBP11.29□□□□□ -0.6
LDLR-207ENST00000558013 TSPAN9O75954 239 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 NAT1P18440 290 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 RCC1P18754 421 aaPredicted RBP11.29□□□□□ -0.6
LDLR-207ENST00000558013 CCL1P22362 96 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 CSNK1A1P48729 337 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 CBLN2Q8IUK8 224 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 BAP18Q8IXM2 172 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 FADS6Q8N9I5 356 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 FBXO17Q96EF6 278 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 PECRQ9BY49 303 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 MOB1AQ9H8S9 216 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 PROK2Q9HC23 129 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 MRPS17Q9Y2R5 130 aaKnown RBP11.29□□□□□ -0.6
LDLR-207ENST00000558013 SPRY1O43609 319 aaPredicted RBP11.29□□□□□ -0.6
LDLR-207ENST00000558013 CCL4P13236 92 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 ACKR3P25106 362 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 EPHA8P29322 1005 aaPredicted RBP11.29□□□□□ -0.6
LDLR-207ENST00000558013 GSK3AP49840 483 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 H3F3AP84243 136 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 PCOLCEQ15113 449 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 PDCD1Q15116 288 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 ZNF585AQ6P3V2 769 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 TMEM17Q86X19 198 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 OR4A4PQ8NGN8 299 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 NABP1Q96AH0 204 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 CPNE2Q96FN4 548 aaPredicted RBP11.29□□□□□ -0.6
LDLR-207ENST00000558013 LIME1Q9H400 295 aa11.29□□□□□ -0.6
LDLR-207ENST00000558013 GPR173Q9NS66 373 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms