RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 RRP15Q9Y3B9 282 aaKnown RBP11.45□□□□□ -0.58
SHMT2-228ENST00000557302 LOC107986453A0A1B0GWG9 222 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 EFCAB10A6NFE3 127 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 A6NLC8 198 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 DHRS7CA6NNS2 312 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 IGHV2-70P01814 119 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 LIMS3P0CW19 117 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 LIMS4P0CW20 117 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 PIPP12273 146 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-228ENST00000557302 MYL12AP19105 171 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 RBMXP38159 391 aaKnown RBP11.44□□□□□ -0.58
SHMT2-228ENST00000557302 KIR3DL2P43630 455 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 CCR9P51686 369 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 MRPL28Q13084 256 aaKnown RBP11.44□□□□□ -0.58
SHMT2-228ENST00000557302 MED21Q13503 144 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 LAIR2Q6ISS4 152 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 KRT74Q7RTS7 529 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 CCDC54Q8NEL0 328 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 OR1M1Q8NGA1 313 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 OR5P3Q8WZ94 311 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 GGHQ92820 318 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 TMEM80Q96HE8 168 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 ISG20L2Q9H9L3 353 aaKnown RBP11.44□□□□□ -0.58
SHMT2-228ENST00000557302 PLEKHA1Q9HB21 404 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 PLCXD1Q9NUJ7 323 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 C1orf123Q9NWV4 160 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 CNOT2Q9NZN8 540 aaKnown RBP11.44□□□□□ -0.58
SHMT2-228ENST00000557302 EXOSC1Q9Y3B2 195 aaKnown RBP11.44□□□□□ -0.58
SHMT2-228ENST00000557302 V9GYS6 101 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 TANC2Q9HCD6 1990 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 NSD1Q96L73 2696 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-228ENST00000557302 DYSFO75923 2080 aa11.44□□□□□ -0.58
SHMT2-228ENST00000557302 TMEM210A6NLX4 147 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 H3BSH0 61 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 XPNPEP2O43895 674 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 ZNF16P17020 682 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-228ENST00000557302 VHLP40337 213 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 MDH2P40926 338 aaKnown RBP11.43□□□□□ -0.58
SHMT2-228ENST00000557302 ETV1P50549 477 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 GBX2P52951 348 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-228ENST00000557302 CDH15P55291 814 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 NANOS3P60323 173 aaKnown RBP11.43□□□□□ -0.58
SHMT2-228ENST00000557302 LMO4P61968 165 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 ST3GAL4Q11206 333 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 ALKBH1Q13686 389 aaKnown RBP11.43□□□□□ -0.58
SHMT2-228ENST00000557302 ZMYND11Q15326 602 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 TMEM244Q5VVB8 128 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 TMPRSS11AQ6ZMR5 421 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 Q6ZSR3 168 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 KCTD8Q6ZWB6 473 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 WDR86Q86TI4 376 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 LRRC28Q86X40 367 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-228ENST00000557302 MUC20Q8N307 709 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-228ENST00000557302 SPICQ8N5J4 248 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 BPIFB6Q8NFQ5 453 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 OR14K1Q8NGZ2 314 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 HAVCR2Q8TDQ0 301 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 HPSE2Q8WWQ2 592 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 RAB39BQ96DA2 213 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 MSI2Q96DH6 328 aaKnown RBP11.43□□□□□ -0.58
SHMT2-228ENST00000557302 RNF170Q96K19 258 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 ZNF665Q9H7R5 613 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 YAE1D1Q9NRH1 226 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 CHCHD3Q9NX63 227 aaKnown RBP11.43□□□□□ -0.58
SHMT2-228ENST00000557302 UBAP1Q9NZ09 502 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 FRRS1LQ9P0K9 344 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 RNF7Q9UBF6 113 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 PSORS1C1Q9UIG5 152 aa11.43□□□□□ -0.58
SHMT2-228ENST00000557302 CAB39Q9Y376 341 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-228ENST00000557302 PPIAL4EA0A075B759 164 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 hCG_1807616A0A1W2PRN6 198 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 PPIAL4DF5H284 164 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 NRASP01111 189 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 IGHV2-5P01817 119 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 PPIAL4FP0DN26 164 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 ZNF12P17014 697 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 MYF6P23409 242 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 CSNK2BP67870 215 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 ZNF154Q13106 437 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 CEACAM21Q3KPI0 293 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 KRTAP21-3Q3LHN1 58 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 TMEM155Q4W5P6 130 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 CEP78Q5JTW2 689 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 CLVS2Q5SYC1 327 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 C6orf141Q5SZD1 244 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 PLCXD3Q63HM9 321 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 ZNF826PQ6ZT77 177 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 MOB3CQ70IA8 216 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 AHSA2Q719I0 299 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 RDH10Q8IZV5 341 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 STX19Q8N4C7 294 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 KLHL36Q8N4N3 616 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 ZNF676Q8N7Q3 588 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 LINC01356Q8N9X3 169 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 C1orf159Q96HA4 380 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 ANKRD60Q9BZ19 345 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 PCDHB10Q9UN67 800 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 PPIAL4AQ9Y536 164 aa11.42□□□□□ -0.58
SHMT2-228ENST00000557302 SONP18583 2426 aaKnown RBP11.42□□□□□ -0.58
SHMT2-228ENST00000557302 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.41□□□□□ -0.586e-13■■■■■ 64.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms