RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 C6orf52Q5T4I8 152 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 ACP7Q6ZNF0 438 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 APRG1Q8IVJ8 170 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 ZNF786Q8N393 782 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 NPBQ8NG41 125 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 OR52E5Q8NH55 327 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 CA5BP1Q8WTZ4 195 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 PDCD6IPQ8WUM4 868 aaKnown RBP3.02□□□□□ -1.93
PRPF39-210ENST00000556718 KIAA1143Q96AT1 154 aaPredicted RBP3.02□□□□□ -1.93
PRPF39-210ENST00000556718 CSPG4P5Q96PW8 444 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 LRRC19Q9H756 370 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 BEX1Q9HBH7 125 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 ABCB10Q9NRK6 738 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 PLSCR3Q9NRY6 295 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 AGPAT4Q9NRZ5 378 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 DEC1Q9P2X7 70 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 POMPQ9Y244 141 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 KIF25-AS1Q9Y6Z4 181 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 CEP170BQ9Y4F5 1589 aaPredicted RBP3.02□□□□□ -1.93
PRPF39-210ENST00000556718 TUBGCP6Q96RT7 1819 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 NUP153P49790 1475 aaKnown RBP3.02□□□□□ -1.93
PRPF39-210ENST00000556718 ITSN1Q15811 1721 aa3.02□□□□□ -1.93
PRPF39-210ENST00000556718 MYH7BA7E2Y1 1941 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 ZCCHC11Q5TAX3 1644 aaKnown RBP3.01□□□□□ -1.93
PRPF39-210ENST00000556718 MAP3K4Q9Y6R4 1608 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 ABCA8O94911 1581 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 DIP2AQ14689 1571 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 FRMPD1Q5SYB0 1578 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 BICRAQ9NZM4 1560 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 A0A1B0GW55 424 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 TSPAN11A1L157 253 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 C2orf74A8MZ97 194 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 SMKR1H3BMG3 65 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 hCG_2039718K7EN88 272 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 COPEO14579 308 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 XRCC2O43543 280 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 NDUFA2O43678 99 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 CDC40O60508 579 aaKnown RBP eCLIP3.01□□□□□ -1.93
PRPF39-210ENST00000556718 GMDSO60547 372 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 SEMA3DO95025 777 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 UTS2O95399 124 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 BGLAPP02818 100 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 DUX4L2P0CJ85 424 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 DUX4L3P0CJ86 424 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 DUX4L4P0CJ87 422 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 DUX4L5P0CJ88 424 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 DUX4L6P0CJ89 424 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 DUX4L7P0CJ90 424 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 SRMP19623 302 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 RAB3AP20336 220 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 RAB3BP20337 219 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 ME2P23368 584 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 OR1E1P30953 314 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 CARD18P57730 90 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 OR2B6P58173 313 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 FLI1Q01543 452 aaPredicted RBP3.01□□□□□ -1.93
PRPF39-210ENST00000556718 IFITM2Q01629 132 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 ZNF33AQ06730 810 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 FLOT2Q14254 428 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 QPRTQ15274 297 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 ALX1Q15699 326 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 ZNF79Q15937 498 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 GUCA2BQ16661 112 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 TTLL9Q3SXZ7 439 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 NKAIN1Q4KMZ8 207 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 RBM48Q5RL73 367 aaKnown RBP3.01□□□□□ -1.93
PRPF39-210ENST00000556718 TPTE2P1Q5T6R2 138 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 HES5Q5TA89 166 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 UBE2UQ5VVX9 321 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 PPP1R2P3Q6NXS1 205 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 H3F3CQ6NXT2 135 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 ULK3Q6PHR2 472 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 ZNF773Q6PK81 442 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 DUX4L9Q6RFH8 374 aaPredicted RBP3.01□□□□□ -1.93
PRPF39-210ENST00000556718 IL34Q6ZMJ4 242 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 TEX43Q6ZNM6 134 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 COX15Q7KZN9 410 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 STRADAQ7RTN6 431 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 C6orf120Q7Z4R8 191 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 RAB43Q86YS6 212 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 SLC13A5Q86YT5 568 aaPredicted RBP3.01□□□□□ -1.93
PRPF39-210ENST00000556718 ZNF547Q8IVP9 402 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 BBS7Q8IWZ6 715 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 DEFB107AQ8IZN7 70 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.01□□□□□ -1.93
PRPF39-210ENST00000556718 OR5H6Q8NGV6 325 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 OR8K3Q8NH51 312 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 OR4S2Q8NH73 311 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 NUBPLQ8TB37 319 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 PIH1D2Q8WWB5 315 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 TMEM230Q96A57 120 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 PPWD1Q96BP3 646 aaKnown RBP3.01□□□□□ -1.93
PRPF39-210ENST00000556718 DUS3LQ96G46 650 aaKnown RBP3.01□□□□□ -1.93
PRPF39-210ENST00000556718 NRTNQ99748 197 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 C9orf16Q9BUW7 83 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 MRPL37Q9BZE1 423 aaKnown RBP3.01□□□□□ -1.93
PRPF39-210ENST00000556718 MRM3Q9HC36 420 aaKnown RBP3.01□□□□□ -1.93
PRPF39-210ENST00000556718 MYOZ2Q9NPC6 264 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 SLCO1B3Q9NPD5 702 aa3.01□□□□□ -1.93
PRPF39-210ENST00000556718 FBXO8Q9NRD0 319 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms