RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 HOXD1Q9GZZ0 328 aa5.07□□□□□ -1.6
VPS29-210ENST00000552130 TREM2Q9NZC2 230 aa5.07□□□□□ -1.6
VPS29-210ENST00000552130 ZNF225Q9UK10 706 aa5.07□□□□□ -1.6
VPS29-210ENST00000552130 OR51B4Q9Y5P0 310 aa5.07□□□□□ -1.6
VPS29-210ENST00000552130 CAMSAP1Q5T5Y3 1602 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 A0A0G2JLM5 398 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 SMIM35A0A1B0GVV1 85 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 TRABD2BA6NFA1 517 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 MSGN1A6NI15 193 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 METTL15A6NJ78 407 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 C15orf65H3BRN8 121 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 MFNGO00587 321 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 CDX4O14627 284 aaPredicted RBP5.06□□□□□ -1.6
VPS29-210ENST00000552130 CELA2AP08217 269 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 CD37P11049 281 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 GGT1P19440 569 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 ANOS1P23352 680 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 WARSP23381 471 aaKnown RBP5.06□□□□□ -1.6
VPS29-210ENST00000552130 NR4A2P43354 598 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 GPR6P46095 362 aaPredicted RBP5.06□□□□□ -1.6
VPS29-210ENST00000552130 CDKN2DP55273 166 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 AP1S1P61966 158 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 NUTF2P61970 127 aaKnown RBP5.06□□□□□ -1.6
VPS29-210ENST00000552130 SLC35A1P78382 337 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 FMODQ06828 376 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 CD300CQ08708 224 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 Q0VFX4 171 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 NRF1Q16656 503 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 ARHGAP11BQ3KRB8 267 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 LIN52Q52LA3 116 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 TMEM97Q5BJF2 176 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 ZNF790Q6PG37 636 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 MRPL55Q7Z7F7 128 aaKnown RBP5.06□□□□□ -1.6
VPS29-210ENST00000552130 COMMD7Q86VX2 200 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 OR10K1Q8NGX5 313 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 LNX1Q8TBB1 728 aaPredicted RBP5.06□□□□□ -1.6
VPS29-210ENST00000552130 ASB17Q8WXJ9 295 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 TMEM230Q96A57 120 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 ZHX1-C8orf76Q96EF9 292 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 CPNE2Q96FN4 548 aaPredicted RBP5.06□□□□□ -1.6
VPS29-210ENST00000552130 ZNF486Q96H40 463 aaPredicted RBP5.06□□□□□ -1.6
VPS29-210ENST00000552130 TSC22D3Q99576 134 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 ARV1Q9H2C2 271 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 TPK1Q9H3S4 243 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 SH2D2AQ9NP31 389 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 B3GAT2Q9NPZ5 323 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 DEPPQ9NTK1 212 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 OCIAD1Q9NX40 245 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 THYN1Q9P016 225 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 PRO0628Q9UI54 55 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 RWDD2AQ9UIY3 292 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 MOKQ9UQ07 419 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 TRAPPC4Q9Y296 219 aa5.06□□□□□ -1.6
VPS29-210ENST00000552130 IGHV1OR21-1A0A087WYE8 117 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 OR6C6A6NF89 314 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 LINC01548A6NM66 108 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 SYCE1LA8MT33 242 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 PHYHO14832 338 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 SLC31A2O15432 143 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 TFPTP0C1Z6 253 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 F2RP25116 425 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 CHRNB4P30926 498 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 GCLMP48507 274 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 APOC4P55056 127 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 MS4A2Q01362 244 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 APOFQ13790 326 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 GINS1Q14691 196 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 SYT6Q5T7P8 510 aaPredicted RBP5.05□□□□□ -1.6
VPS29-210ENST00000552130 TNFAIP8L2Q6P589 184 aaPredicted RBP5.05□□□□□ -1.6
VPS29-210ENST00000552130 XKRXQ6PP77 449 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 BAIAP2L2Q6UXY1 529 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 RASSF6Q6ZTQ3 369 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 ARIH2OSQ8N7S6 290 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 OR2Z1Q8NG97 314 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 FGF14Q92915 247 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 BTF3L4Q96K17 158 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 C9orf85Q96MD7 179 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 SIGMAR1Q99720 223 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 TMED9Q9BVK6 235 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 ALX4Q9H161 411 aaPredicted RBP5.05□□□□□ -1.6
VPS29-210ENST00000552130 OR51I1Q9H343 314 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 ARMC1Q9NVT9 282 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 TMEM181Q9P2C4 612 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 SPRR3Q9UBC9 169 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 RAB22AQ9UL26 194 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 LSM5Q9Y4Y9 91 aaKnown RBP5.05□□□□□ -1.6
VPS29-210ENST00000552130 CCDC144AA2RUR9 1427 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 RIMS2Q9UQ26 1411 aa5.05□□□□□ -1.6
VPS29-210ENST00000552130 ZNF726A6NNF4 738 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 C15orf61A6NNL5 157 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 MIF4GDA9UHW6 222 aaKnown RBP5.04□□□□□ -1.6
VPS29-210ENST00000552130 TNFRSF13BO14836 293 aaPredicted RBP5.04□□□□□ -1.6
VPS29-210ENST00000552130 CD99P14209 185 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 MYL12AP19105 171 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 AK4P27144 223 aaPredicted RBP5.04□□□□□ -1.6
VPS29-210ENST00000552130 CCR7P32248 378 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 PFN2P35080 140 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 PPICP45877 212 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 RPL29P47914 159 aaKnown RBP5.04□□□□□ -1.6
VPS29-210ENST00000552130 RND2P52198 227 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms