RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 CH25HO95992 272 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 GYPAP02724 150 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 HLA-DPB1P04440 258 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 DUX4L2P0CJ85 424 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 DUX4L3P0CJ86 424 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 DUX4L4P0CJ87 422 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 DUX4L5P0CJ88 424 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 DUX4L6P0CJ89 424 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 DUX4L7P0CJ90 424 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 IRF2P14316 349 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 ZNF26P17031 533 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-204ENST00000549064 EEF1B2P24534 225 aaKnown RBP5.23□□□□□ -1.57
LIMA1-204ENST00000549064 ALDH3A1P30838 453 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 S100A3P33764 101 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 HTR5AP47898 357 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 CDH12P55289 794 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 NME5P56597 212 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 DSTNP60981 165 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 ELF3P78545 371 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-204ENST00000549064 MAD2L1Q13257 205 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-204ENST00000549064 OR1Q1Q15612 314 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 MPPED2Q15777 294 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 GTDC1Q4AE62 458 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 CLEC12AQ5QGZ9 265 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 C10orf128Q5T292 105 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 CST9LP1Q5W188 147 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 IGFL4Q6B9Z1 124 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 DUX4L9Q6RFH8 374 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-204ENST00000549064 PET117Q6UWS5 81 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 RBPMS2Q6ZRY4 209 aaKnown RBP5.23□□□□□ -1.57
LIMA1-204ENST00000549064 NPEPL1Q8NDH3 523 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 BHLHE23Q8NDY6 225 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 OR13G1Q8NGZ3 307 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 SLC7A13Q8TCU3 470 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 NPRL2Q8WTW4 380 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 SLC7A6Q92536 515 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 SNAPC3Q92966 411 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 EME1Q96AY2 570 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 TESCQ96BS2 214 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 DDOQ99489 341 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 FMO2Q99518 471 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 FAM110AQ9BQ89 295 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 DCTN5Q9BTE1 182 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 NPFFR1Q9GZQ6 430 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 KLK15Q9H2R5 256 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 CACYBPQ9HB71 228 aaKnown RBP5.23□□□□□ -1.57
LIMA1-204ENST00000549064 CHCHD3Q9NX63 227 aaKnown RBP5.23□□□□□ -1.57
LIMA1-204ENST00000549064 PTTG3PQ9NZH4 202 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 PSMC3IPQ9P2W1 217 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-204ENST00000549064 DNAJB9Q9UBS3 223 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 DUX4Q9UBX2 424 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 IFT52Q9Y366 437 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 KPTNQ9Y664 436 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 PCLOQ9Y6V0 5065 aa5.23□□□□□ -1.57
LIMA1-204ENST00000549064 HERC2O95714 4834 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 A0A0G2JPF8 293 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 RBMY1BA6NDE4 496 aaKnown RBP5.22□□□□□ -1.57
LIMA1-204ENST00000549064 RBMY1EA6NEQ0 496 aaKnown RBP5.22□□□□□ -1.57
LIMA1-204ENST00000549064 HNRNPCL2B2RXH8 293 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 HNRNPCL3B7ZW38 293 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 E9PBE3 544 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 LGALS8O00214 317 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 KPNA4O00629 521 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-204ENST00000549064 DVL1O14640 695 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 DUS4LO95620 317 aaKnown RBP5.22□□□□□ -1.57
LIMA1-204ENST00000549064 MT-ATP6P00846 226 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 RBMY1DP0C7P1 496 aaKnown RBP5.22□□□□□ -1.57
LIMA1-204ENST00000549064 HNRNPCL4P0DMR1 293 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 ATP6V1B1P15313 513 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 ACADSP16219 412 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 IL12AP29459 219 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 TNFSF8P32971 234 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 SERPINB5P36952 375 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 BMXP51813 675 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 ZNF133P52736 654 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-204ENST00000549064 MAB21L1Q13394 359 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 ENDOGQ14249 297 aaKnown RBP5.22□□□□□ -1.57
LIMA1-204ENST00000549064 OR8B8Q15620 311 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 ZNF74Q16587 644 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 FAM27BQ5VT28 67 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 FAM91A1Q658Y4 838 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 C8orf74Q6P047 294 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 METAP1DQ6UB28 335 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-204ENST00000549064 CCDC121Q6ZUS5 278 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 C4orf33Q8N1A6 199 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 TRIML2Q8N7C3 387 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 CLDN22Q8N7P3 220 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 Q8N7P7 452 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 SDR9C7Q8NEX9 313 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 OR8G5Q8NG78 346 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 OR11L1Q8NGX0 322 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 IFT81Q8WYA0 676 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 TNFRSF14Q92956 283 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 PTP4A1Q93096 173 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 MAL2Q969L2 176 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 SLC35B4Q969S0 331 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 HARBI1Q96MB7 349 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 ZNF570Q96NI8 536 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 SEPHS2Q99611 448 aa5.22□□□□□ -1.57
LIMA1-204ENST00000549064 TMEM43Q9BTV4 400 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms